Analysis of interatomic Contacts of Structural Units in PDB entry:
3AG2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3AG2 entry

There are 5 chains in PDB entry 3AG2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 2	LYS 514
B	ALA 2	LEU 227
C	HIS 3	SER 261
D	SER 4	LYS 147
E	HIS 5	PRO 101

There are139 helices in PDB entry 3AG2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	11	41	Right-handed alpha
Helix 3	AA3	A	50	68	Right-handed alpha
Helix 4	AA4	A	69	75	Right-handed alpha
Helix 5	AA5	A	77	87	Right-handed alpha
Helix 6	AA6	A	94	104	Right-handed alpha
Helix 7	AA7	A	104	118	Right-handed alpha
Helix 8	AA8	A	140	171	Right-handed alpha
Helix 9	AA9	A	177	181	Right-handed 310
Helix 10	AB1	A	182	215	Right-handed alpha
Helix 11	AB2	A	221	225	Right-handed 310
Helix 12	AB3	A	227	262	Right-handed alpha
Helix 13	AB4	A	269	284	Right-handed alpha
Helix 14	AB5	A	285	286	Right-handed 310
Helix 15	AB6	A	287	292	Right-handed 310
Helix 16	AB7	A	298	312	Right-handed alpha
Helix 17	AB8	A	312	328	Right-handed alpha
Helix 18	AB9	A	335	360	Right-handed alpha
Helix 19	AC1	A	360	368	Right-handed alpha
Helix 20	AC2	A	370	383	Right-handed alpha
Helix 21	AC3	A	384	402	Right-handed alpha
Helix 22	AC4	A	406	434	Right-handed alpha
Helix 23	AC5	A	444	446	Right-handed 310
Helix 24	AC6	A	447	479	Right-handed alpha
Helix 25	AC7	A	487	495	Right-handed 310
Helix 26	AC8	B	14	46	Right-handed alpha
Helix 27	AC9	B	58	89	Right-handed alpha
Helix 28	AD1	B	124	128	Right-handed 310
Helix 29	AD2	B	166	169	Right-handed 310
Helix 30	AD3	B	203	206	Right-handed 310
Helix 31	AD4	B	215	226	Right-handed alpha
Helix 32	AD5	C	15	38	Right-handed alpha
Helix 33	AD6	C	40	66	Right-handed alpha
Helix 34	AD7	C	72	106	Right-handed alpha
Helix 35	AD8	C	109	113	Right-handed 310
Helix 36	AD9	C	128	153	Right-handed alpha
Helix 37	AE1	C	155	184	Right-handed alpha
Helix 38	AE2	C	190	224	Right-handed alpha
Helix 39	AE3	C	232	256	Right-handed alpha
Helix 40	AE4	D	7	11	Right-handed 310
Helix 41	AE5	D	34	45	Right-handed alpha
Helix 42	AE6	D	46	51	Right-handed 310
Helix 43	AE7	D	52	64	Right-handed alpha
Helix 44	AE8	D	67	72	Right-handed alpha
Helix 45	AE9	D	76	103	Right-handed alpha
Helix 46	AF1	D	108	111	Right-handed 310
Helix 47	AF2	D	112	126	Right-handed alpha
Helix 48	AF3	D	134	136	Right-handed 310
Helix 49	AF4	E	7	21	Right-handed alpha
Helix 50	AF5	E	25	37	Right-handed alpha
Helix 51	AF6	E	44	58	Right-handed alpha
Helix 52	AF7	E	60	75	Right-handed alpha
Helix 53	AF8	E	80	97	Right-handed alpha
Helix 54	AF9	F	8	13	Right-handed alpha
Helix 55	AG1	F	14	26	Right-handed alpha
Helix 56	AG2	G	12	23	Right-handed alpha
Helix 57	AG3	G	23	36	Right-handed alpha
Helix 58	AG4	H	25	46	Right-handed alpha
Helix 59	AG5	H	49	52	Right-handed 310
Helix 60	AG6	H	53	64	Right-handed alpha
Helix 61	AG7	H	65	79	Right-handed alpha
Helix 62	AG8	I	11	39	Right-handed alpha
Helix 63	AG9	I	39	53	Right-handed alpha
Helix 64	AH1	I	55	66	Right-handed alpha
Helix 65	AH2	J	4	14	Right-handed alpha
Helix 66	AH3	J	19	23	Right-handed 310
Helix 67	AH4	J	25	54	Right-handed alpha
Helix 68	AH5	K	8	36	Right-handed alpha
Helix 69	AH6	L	17	47	Right-handed alpha
Helix 70	AH7	M	11	36	Right-handed alpha
Helix 71	AH8	M	36	41	Right-handed alpha
Helix 72	AH9	N	2	7	Right-handed alpha
Helix 73	AI1	N	11	42	Right-handed alpha
Helix 74	AI2	N	50	68	Right-handed alpha
Helix 75	AI3	N	69	75	Right-handed alpha
Helix 76	AI4	N	77	87	Right-handed alpha
Helix 77	AI5	N	94	104	Right-handed alpha
Helix 78	AI6	N	104	118	Right-handed alpha
Helix 79	AI7	N	140	171	Right-handed alpha
Helix 80	AI8	N	177	181	Right-handed 310
Helix 81	AI9	N	182	215	Right-handed alpha
Helix 82	AJ1	N	221	225	Right-handed 310
Helix 83	AJ2	N	227	262	Right-handed alpha
Helix 84	AJ3	N	269	284	Right-handed alpha
Helix 85	AJ4	N	285	286	Right-handed 310
Helix 86	AJ5	N	287	292	Right-handed 310
Helix 87	AJ6	N	298	312	Right-handed alpha
Helix 88	AJ7	N	312	328	Right-handed alpha
Helix 89	AJ8	N	335	360	Right-handed alpha
Helix 90	AJ9	N	360	368	Right-handed alpha
Helix 91	AK1	N	370	383	Right-handed alpha
Helix 92	AK2	N	384	402	Right-handed alpha
Helix 93	AK3	N	406	434	Right-handed alpha
Helix 94	AK4	N	444	446	Right-handed 310
Helix 95	AK5	N	447	479	Right-handed alpha
Helix 96	AK6	N	487	495	Right-handed 310
Helix 97	AK7	O	14	47	Right-handed alpha
Helix 98	AK8	O	58	89	Right-handed alpha
Helix 99	AK9	O	124	128	Right-handed 310
Helix 100	AL1	O	166	169	Right-handed 310
Helix 101	AL2	O	203	207	Right-handed 310
Helix 102	AL3	O	215	226	Right-handed alpha
Helix 103	AL4	P	15	37	Right-handed alpha
Helix 104	AL5	P	40	66	Right-handed alpha
Helix 105	AL6	P	72	107	Right-handed alpha
Helix 106	AL7	P	109	113	Right-handed 310
Helix 107	AL8	P	128	153	Right-handed alpha
Helix 108	AL9	P	155	184	Right-handed alpha
Helix 109	AM1	P	190	224	Right-handed alpha
Helix 110	AM2	P	232	256	Right-handed alpha
Helix 111	AM3	Q	34	45	Right-handed alpha
Helix 112	AM4	Q	46	51	Right-handed 310
Helix 113	AM5	Q	52	64	Right-handed alpha
Helix 114	AM6	Q	67	72	Right-handed alpha
Helix 115	AM7	Q	76	103	Right-handed alpha
Helix 116	AM8	Q	108	111	Right-handed 310
Helix 117	AM9	Q	112	126	Right-handed alpha
Helix 118	AN1	Q	134	136	Right-handed 310
Helix 119	AN2	R	7	21	Right-handed alpha
Helix 120	AN3	R	25	37	Right-handed alpha
Helix 121	AN4	R	44	58	Right-handed alpha
Helix 122	AN5	R	60	75	Right-handed alpha
Helix 123	AN6	R	80	97	Right-handed alpha
Helix 124	AN7	S	8	13	Right-handed alpha
Helix 125	AN8	S	14	26	Right-handed alpha
Helix 126	AN9	T	12	23	Right-handed alpha
Helix 127	AO1	T	23	36	Right-handed alpha
Helix 128	AO2	U	25	46	Right-handed alpha
Helix 129	AO3	U	49	52	Right-handed 310
Helix 130	AO4	U	53	64	Right-handed alpha
Helix 131	AO5	U	65	79	Right-handed alpha
Helix 132	AO6	V	11	39	Right-handed alpha
Helix 133	AO7	V	39	53	Right-handed alpha
Helix 134	AO8	V	55	66	Right-handed alpha
Helix 135	AO9	W	4	14	Right-handed alpha
Helix 136	AP1	W	25	54	Right-handed alpha
Helix 137	AP2	X	8	36	Right-handed alpha
Helix 138	AP3	Y	17	47	Right-handed alpha
Helix 139	AP4	Z	11	36	Right-handed alpha

There are 14 sheets in PDB entry 3AG2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	M	2	3	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	511	first strand
Strand 2	F	55	60	parallel
Strand 3	F	70	75	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	150	156	parallel
Strand 5	B	180	184	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	208	214	parallel
Strand 3	B	190	195	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	170	174	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	144	145	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	51	first strand
Strand 2	F	88	93	parallel
Strand 3	F	80	81	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	482	484	first strand
Strand 2	Z	2	3	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	510	511	first strand
Strand 2	S	55	60	parallel
Strand 3	S	70	75	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	116	120	first strand
Strand 2	O	105	110	anti-parallel
Strand 3	O	95	102	anti-parallel
Strand 4	O	150	156	parallel
Strand 5	O	180	184	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	142	145	first strand
Strand 2	O	209	214	parallel
Strand 3	O	190	194	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	161	165	first strand
Strand 2	O	170	174	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	138	139	first strand
Strand 2	Q	144	145	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	47	51	first strand
Strand 2	S	88	93	parallel
Strand 3	S	80	81	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3AG2

Analysis of interatomic Contacts of Structural Units in PDB entry:
3AG2