Analysis of interatomic Contacts of Structural Units in PDB entry:
3AVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AVS entry

There is 1 chain in PDB entry 3AVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 886PRO 1395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3AVS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
892 901Right-handed alpha
Helix 2
2
A
932 936Right-handed 310
Helix 3
3
A
947 952Right-handed alpha
Helix 4
4
A
954 962Right-handed alpha
Helix 5
5
A
972 978Right-handed alpha
Helix 6
6
A
980 984Right-handed 310
Helix 7
7
A
985 994Right-handed alpha
Helix 8
8
A
1032 1047Right-handed alpha
Helix 9
9
A
1096 1103Right-handed alpha
Helix 10
10
A
1104 1106Right-handed 310
Helix 11
11
A
1107 1111Right-handed 310
Helix 12
12
A
1117 1122Right-handed 310
Helix 13
13
A
1148 1152Right-handed 310
Helix 14
14
A
1170 1172Right-handed 310
Helix 15
15
A
1173 1184Right-handed alpha
Helix 16
16
A
1196 1203Right-handed alpha
Helix 17
17
A
1245 1262Right-handed alpha
Helix 18
18
A
1269 1281Right-handed alpha
Helix 19
19
A
1285 1313Right-handed alpha
Helix 20
20
A
1346 1351Right-handed alpha
Helix 21
21
A
1358 1366Right-handed alpha
Helix 22
22
A
1379 1390Right-handed alpha
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There are 4 sheets in PDB entry 3AVS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
942 944first strand
Strand 2
A
967 971parallel
Strand 3
A
1217 1220anti-parallel
Strand 4
A
1153 1161anti-parallel
Strand 5
A
1234 1241anti-parallel
Strand 6
A
1133 1137anti-parallel
Strand 7
A
1081 1089anti-parallel
Strand 8
A
997 1004anti-parallel
Strand 9
A
1026 1031anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1142 1146first strand
Strand 2
A
1225 1230anti-parallel
Strand 3
A
1164 1169anti-parallel
Strand 4
A
1208 1212anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1318 1319first strand
Strand 2
A
1372 1376parallel
Strand 3
A
1341 1345anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1329 1330first strand
Strand 2
A
1337 1338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il