Analysis of interatomic Contacts of Structural Units in PDB entry:
3B1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B1M entry

There are 2 chains in PDB entry 3B1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 206TYR 477
B
 PRO 6PRO 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3B1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
206 226Right-handed alpha
Helix 2
2
A
229 238Right-handed alpha
Helix 3
3
A
251 258Right-handed alpha
Helix 4
4
A
276 301Right-handed alpha
Helix 5
5
A
305 309Right-handed 310
Helix 6
6
A
310 333Right-handed alpha
Helix 7
7
A
350 355Right-handed alpha
Helix 8
8
A
360 376Right-handed alpha
Helix 9
9
A
380 393Right-handed alpha
Helix 10
10
A
402 425Right-handed alpha
Helix 11
11
A
430 460Right-handed alpha
Helix 12
12
A
466 474Right-handed alpha
Helix 13
13
B
7 15Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3B1M.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il