Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3B8D entry

There are 4 chains in PDB entry 3B8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	TYR 363
B	PRO 1	TYR 363
C	PRO 1	TYR 363
D	PRO 1	TYR 363

There are 62 helices in PDB entry 3B8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	23	Right-handed alpha
Helix 2	2	A	35	46	Right-handed alpha
Helix 3	3	A	51	64	Right-handed alpha
Helix 4	4	A	66	70	Right-handed 310
Helix 5	5	A	79	84	Right-handed alpha
Helix 6	6	A	92	100	Right-handed alpha
Helix 7	7	A	129	140	Right-handed alpha
Helix 8	8	A	159	180	Right-handed alpha
Helix 9	9	A	197	219	Right-handed alpha
Helix 10	10	A	222	226	Right-handed 310
Helix 11	11	A	244	258	Right-handed alpha
Helix 12	12	A	275	289	Right-handed alpha
Helix 13	13	A	302	314	Right-handed alpha
Helix 14	14	A	316	318	Right-handed 310
Helix 15	15	A	319	338	Right-handed alpha
Helix 16	16	B	8	23	Right-handed alpha
Helix 17	17	B	35	46	Right-handed alpha
Helix 18	18	B	51	64	Right-handed alpha
Helix 19	19	B	66	70	Right-handed 310
Helix 20	20	B	79	84	Right-handed alpha
Helix 21	21	B	92	100	Right-handed alpha
Helix 22	22	B	129	140	Right-handed alpha
Helix 23	23	B	159	180	Right-handed alpha
Helix 24	24	B	197	219	Right-handed alpha
Helix 25	25	B	222	225	Right-handed 310
Helix 26	26	B	244	260	Right-handed alpha
Helix 27	27	B	275	289	Right-handed alpha
Helix 28	28	B	302	314	Right-handed alpha
Helix 29	29	B	318	338	Right-handed alpha
Helix 30	30	B	349	354	Right-handed alpha
Helix 31	31	C	8	23	Right-handed alpha
Helix 32	32	C	35	46	Right-handed alpha
Helix 33	33	C	51	64	Right-handed alpha
Helix 34	34	C	66	70	Right-handed 310
Helix 35	35	C	79	84	Right-handed alpha
Helix 36	36	C	92	100	Right-handed alpha
Helix 37	37	C	129	140	Right-handed alpha
Helix 38	38	C	159	180	Right-handed alpha
Helix 39	39	C	197	219	Right-handed alpha
Helix 40	40	C	222	226	Right-handed 310
Helix 41	41	C	244	258	Right-handed alpha
Helix 42	42	C	275	288	Right-handed alpha
Helix 43	43	C	302	314	Right-handed alpha
Helix 44	44	C	319	338	Right-handed alpha
Helix 45	45	C	354	358	Right-handed 310
Helix 46	46	C	359	363	Right-handed 310
Helix 47	47	D	8	23	Right-handed alpha
Helix 48	48	D	35	47	Right-handed alpha
Helix 49	49	D	51	64	Right-handed alpha
Helix 50	50	D	66	70	Right-handed 310
Helix 51	51	D	79	84	Right-handed alpha
Helix 52	52	D	92	100	Right-handed alpha
Helix 53	53	D	129	140	Right-handed alpha
Helix 54	54	D	159	180	Right-handed alpha
Helix 55	55	D	197	219	Right-handed alpha
Helix 56	56	D	222	225	Right-handed 310
Helix 57	57	D	244	260	Right-handed alpha
Helix 58	58	D	275	288	Right-handed alpha
Helix 59	59	D	302	314	Right-handed alpha
Helix 60	60	D	316	318	Right-handed 310
Helix 61	61	D	319	338	Right-handed alpha
Helix 62	62	D	355	359	Right-handed 310

There are 8 sheets in PDB entry 3B8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	73	78	parallel
Strand 3	A	103	107	parallel
Strand 4	A	144	151	parallel
Strand 5	A	183	190	parallel
Strand 6	A	227	228	parallel
Strand 7	A	266	269	parallel
Strand 8	A	296	301	parallel
Strand 9	A	28	31	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	122	124	anti-parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	73	78	parallel
Strand 3	B	103	107	parallel
Strand 4	B	142	151	parallel
Strand 5	B	183	190	parallel
Strand 6	B	227	228	parallel
Strand 7	B	266	269	parallel
Strand 8	B	296	301	parallel
Strand 9	B	28	31	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	122	124	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	73	78	parallel
Strand 3	C	103	107	parallel
Strand 4	C	144	151	parallel
Strand 5	C	183	190	parallel
Strand 6	C	227	228	parallel
Strand 7	C	266	269	parallel
Strand 8	C	296	301	parallel
Strand 9	C	28	32	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	122	124	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	73	78	parallel
Strand 3	D	103	107	parallel
Strand 4	D	142	151	parallel
Strand 5	D	183	190	parallel
Strand 6	D	227	228	parallel
Strand 7	D	266	269	parallel
Strand 8	D	296	301	parallel
Strand 9	D	28	31	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	122	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3B8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8D