Analysis of interatomic Contacts of Structural Units in PDB entry:
3BGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BGY entry

There are 2 chains in PDB entry 3BGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 12ASP 237
B
 THR 1013ASP 1237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3BGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 33Right-handed alpha
Helix 2
2
A
46 61Right-handed alpha
Helix 3
3
A
62 64Right-handed 310
Helix 4
4
A
90 102Right-handed alpha
Helix 5
5
A
105 116Right-handed alpha
Helix 6
6
A
201 205Right-handed 310
Helix 7
7
A
220 236Right-handed alpha
Helix 8
8
B
1016 1033Right-handed alpha
Helix 9
9
B
1046 1061Right-handed alpha
Helix 10
10
B
1062 1064Right-handed 310
Helix 11
11
B
1090 1102Right-handed alpha
Helix 12
12
B
1105 1116Right-handed alpha
Helix 13
13
B
1129 1132Right-handed 310
Helix 14
14
B
1201 1205Right-handed 310
Helix 15
15
B
1220 1237Right-handed alpha
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There are 2 sheets in PDB entry 3BGY. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 42first strand
Strand 2
A
142 152anti-parallel
Strand 3
A
122 136anti-parallel
Strand 4
A
83 88anti-parallel
Strand 5
A
66 77anti-parallel
Strand 6
A
169 183anti-parallel
Strand 7
A
186 196anti-parallel
Strand 8
A
208 215anti-parallel
Strand 9
A
36 42anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1133 1136first strand
Strand 2
B
1142 1152anti-parallel
Strand 3
B
1122 1127anti-parallel
Strand 4
B
1083 1088anti-parallel
Strand 5
B
1066 1077anti-parallel
Strand 6
B
1169 1180anti-parallel
Strand 7
B
1186 1196anti-parallel
Strand 8
B
1208 1215anti-parallel
Strand 9
B
1036 1045anti-parallel
Strand 10
B
1142 1152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il