Analysis of interatomic Contacts of Structural Units in PDB entry:
3BJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BJY entry

There are 4 chains in PDB entry 3BJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 305VAL 738
T
 T 1 A 3
T
 G 5 T 16
P
 A 1 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3BJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
314 323Right-handed alpha
Helix 2
2
A
323 343Right-handed alpha
Helix 3
3
A
365 374Right-handed alpha
Helix 4
4
A
376 380Right-handed 310
Helix 5
5
A
404 410Right-handed alpha
Helix 6
6
A
417 424Right-handed alpha
Helix 7
7
A
437 455Right-handed alpha
Helix 8
8
A
484 502Right-handed alpha
Helix 9
9
A
513 525Right-handed alpha
Helix 10
10
A
533 537Right-handed 310
Helix 11
11
A
538 543Right-handed alpha
Helix 12
12
A
546 550Right-handed 310
Helix 13
13
A
554 565Right-handed alpha
Helix 14
14
A
570 578Right-handed alpha
Helix 15
15
A
579 588Right-handed alpha
Helix 16
16
A
588 599Right-handed alpha
Helix 17
17
A
604 613Right-handed alpha
Helix 18
18
A
613 618Right-handed alpha
Helix 19
19
A
635 657Right-handed alpha
Helix 20
20
A
703 719Right-handed alpha
Helix 21
21
A
721 723Right-handed 310
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There are 3 sheets in PDB entry 3BJY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 465first strand
Strand 2
A
468 474anti-parallel
Strand 3
A
356 363anti-parallel
Strand 4
A
506 511anti-parallel
Strand 5
A
529 530parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
389 391anti-parallel
Strand 3
A
432 434parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 627first strand
Strand 2
A
725 737anti-parallel
Strand 3
A
659 671anti-parallel
Strand 4
A
688 701anti-parallel
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