Analysis of interatomic Contacts of Structural Units in PDB entry:
3C1C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C1C entry

There are 12 chains in PDB entry 3C1C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 438PHE 478
A
THR 480ALA 535
B
ASN 25GLY 102
C
ALA 814LYS 918
D
ARG 1230LYS 1322
E
PRO 638PHE 678
E
THR 680ARG 734
F
ARG 219GLY 302
G
THR 1016LYS 1119
H
THR 1429SER 1520
I
A 1 T 146
J
A 147 T 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3C1C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
444 457Right-handed alpha
Helix 2
2
A
463 476Right-handed alpha
Helix 3
3
A
485 514Right-handed alpha
Helix 4
4
A
520 531Right-handed alpha
Helix 5
5
B
25 29Right-handed 310
Helix 6
6
B
30 41Right-handed alpha
Helix 7
7
B
49 76Right-handed alpha
Helix 8
8
B
82 93Right-handed alpha
Helix 9
9
C
816 822Right-handed alpha
Helix 10
10
C
826 836Right-handed alpha
Helix 11
11
C
845 873Right-handed alpha
Helix 12
12
C
879 889Right-handed alpha
Helix 13
13
C
890 897Right-handed alpha
Helix 14
14
C
912 916Right-handed 310
Helix 15
15
D
1234 1246Right-handed alpha
Helix 16
16
D
1252 1281Right-handed alpha
Helix 17
17
D
1287 1299Right-handed alpha
Helix 18
18
D
1300 1320Right-handed alpha
Helix 19
19
E
644 655Right-handed alpha
Helix 20
20
E
663 679Right-handed alpha
Helix 21
21
E
685 714Right-handed alpha
Helix 22
22
E
720 732Right-handed alpha
Helix 23
23
F
224 228Right-handed 310
Helix 24
24
F
230 241Right-handed alpha
Helix 25
25
F
249 276Right-handed alpha
Helix 26
26
F
282 293Right-handed alpha
Helix 27
27
G
1016 1021Right-handed alpha
Helix 28
28
G
1026 1036Right-handed alpha
Helix 29
29
G
1045 1072Right-handed alpha
Helix 30
30
G
1079 1088Right-handed alpha
Helix 31
31
G
1090 1097Right-handed alpha
Helix 32
32
G
1112 1116Right-handed 310
Helix 33
33
H
1434 1444Right-handed alpha
Helix 34
34
H
1452 1481Right-handed alpha
Helix 35
35
H
1487 1499Right-handed alpha
Helix 36
36
H
1500 1520Right-handed alpha
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There are 10 sheets in PDB entry 3C1C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
483 484first strand
Strand 2
B
80 81parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 519first strand
Strand 2
B
45 46parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 98first strand
Strand 2
G
1101 1102parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
842 843first strand
Strand 2
D
1285 1286parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
877 878first strand
Strand 2
D
1250 1251parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
901 902first strand
Strand 2
F
297 298parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
683 684first strand
Strand 2
F
280 281parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
718 719first strand
Strand 2
F
245 246parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
1042 1043first strand
Strand 2
H
1485 1486parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
1077 1078first strand
Strand 2
H
1450 1451parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il