Analysis of interatomic Contacts of Structural Units in PDB entry:
3C5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C5H entry

There is 1 chain in PDB entry 3C5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 5LYS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3C5H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
59 64Right-handed alpha
Helix 3
3
A
109 113Right-handed 310
Helix 4
4
A
115 121Right-handed alpha
Helix 5
5
A
135 139Right-handed 310
Helix 6
6
A
141 145Right-handed 310
Helix 7
7
A
150 152Right-handed 310
Helix 8
8
A
173 191Right-handed alpha
Helix 9
9
A
201 205Right-handed 310
Helix 10
10
A
206 219Right-handed alpha
Helix 11
11
A
235 249Right-handed alpha
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There are 3 sheets in PDB entry 3C5H. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 79first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
14 20parallel
Strand 4
A
159 165parallel
Strand 5
A
195 200parallel
Strand 6
A
225 227parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
57 58first strand
Strand 2
A
100 101parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
124 126first strand
Strand 2
A
154 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il