Analysis of interatomic Contacts of Structural Units in PDB entry:
3C5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3C5Y entry

There are 32 chains in PDB entry 3C5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	GLY 71
A	GLY 73	LEU 210
B	GLY 0	GLY 71
B	GLY 73	ASP 211
C	GLY 0	GLY 71
C	GLY 73	ASP 211
D	GLY 0	GLY 71
D	GLY 73	LEU 210
E	PHE -2	GLY 71
E	GLY 73	ALA 212
F	GLN -1	GLY 71
F	GLY 73	ASP 211
G	GLY 0	GLY 71
G	GLY 73	LEU 210
H	TYR -3	GLY 71
H	GLY 73	LEU 210
I	GLY 0	GLY 71
I	GLY 73	ASP 211
J	GLY 0	GLY 71
J	GLY 73	ASP 211
K	GLY 0	GLY 71
K	GLY 73	ASP 211
L	GLY 0	GLY 71
L	GLY 73	ALA 212
M	GLY 0	GLY 71
M	GLY 73	ASP 211
N	GLY 0	GLY 71
N	GLY 73	ASP 211
O	GLY 0	GLY 71
O	GLY 73	LEU 210
P	GLY 0	GLY 71
P	GLY 73	LEU 210

There are204 helices in PDB entry 3C5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	13	Right-handed 310
Helix 2	2	A	14	27	Right-handed alpha
Helix 3	3	A	28	30	Right-handed 310
Helix 4	4	A	48	63	Right-handed alpha
Helix 5	5	A	75	84	Right-handed alpha
Helix 6	6	A	95	106	Right-handed alpha
Helix 7	7	A	122	136	Right-handed alpha
Helix 8	8	A	144	146	Right-handed 310
Helix 9	9	A	147	166	Right-handed alpha
Helix 10	10	A	168	176	Right-handed alpha
Helix 11	11	A	177	185	Right-handed alpha
Helix 12	12	A	189	195	Right-handed alpha
Helix 13	13	A	200	209	Right-handed alpha
Helix 14	14	B	8	13	Right-handed 310
Helix 15	15	B	14	27	Right-handed alpha
Helix 16	16	B	28	30	Right-handed 310
Helix 17	17	B	48	62	Right-handed alpha
Helix 18	18	B	75	83	Right-handed alpha
Helix 19	19	B	95	106	Right-handed alpha
Helix 20	20	B	122	136	Right-handed alpha
Helix 21	21	B	147	166	Right-handed alpha
Helix 22	22	B	168	176	Right-handed alpha
Helix 23	23	B	177	185	Right-handed alpha
Helix 24	24	B	189	195	Right-handed alpha
Helix 25	25	B	196	198	Right-handed 310
Helix 26	26	B	200	209	Right-handed alpha
Helix 27	27	C	8	13	Right-handed 310
Helix 28	28	C	14	27	Right-handed alpha
Helix 29	29	C	48	63	Right-handed alpha
Helix 30	30	C	75	83	Right-handed alpha
Helix 31	31	C	95	106	Right-handed alpha
Helix 32	32	C	122	135	Right-handed alpha
Helix 33	33	C	144	146	Right-handed 310
Helix 34	34	C	147	166	Right-handed alpha
Helix 35	35	C	168	176	Right-handed alpha
Helix 36	36	C	177	185	Right-handed alpha
Helix 37	37	C	189	195	Right-handed alpha
Helix 38	38	C	200	209	Right-handed alpha
Helix 39	39	D	8	13	Right-handed 310
Helix 40	40	D	14	27	Right-handed alpha
Helix 41	41	D	28	30	Right-handed 310
Helix 42	42	D	48	62	Right-handed alpha
Helix 43	43	D	75	84	Right-handed alpha
Helix 44	44	D	95	106	Right-handed alpha
Helix 45	45	D	122	136	Right-handed alpha
Helix 46	46	D	144	146	Right-handed 310
Helix 47	47	D	147	166	Right-handed alpha
Helix 48	48	D	168	176	Right-handed alpha
Helix 49	49	D	177	185	Right-handed alpha
Helix 50	50	D	189	195	Right-handed alpha
Helix 51	51	D	196	198	Right-handed 310
Helix 52	52	D	200	209	Right-handed alpha
Helix 53	53	E	8	13	Right-handed 310
Helix 54	54	E	14	27	Right-handed alpha
Helix 55	55	E	28	30	Right-handed 310
Helix 56	56	E	48	62	Right-handed alpha
Helix 57	57	E	75	84	Right-handed alpha
Helix 58	58	E	95	106	Right-handed alpha
Helix 59	59	E	122	136	Right-handed alpha
Helix 60	60	E	144	146	Right-handed 310
Helix 61	61	E	147	166	Right-handed alpha
Helix 62	62	E	168	176	Right-handed alpha
Helix 63	63	E	177	185	Right-handed alpha
Helix 64	64	E	189	195	Right-handed alpha
Helix 65	65	E	200	209	Right-handed alpha
Helix 66	66	F	8	13	Right-handed 310
Helix 67	67	F	14	27	Right-handed alpha
Helix 68	68	F	28	30	Right-handed 310
Helix 69	69	F	48	63	Right-handed alpha
Helix 70	70	F	75	83	Right-handed alpha
Helix 71	71	F	95	106	Right-handed alpha
Helix 72	72	F	122	135	Right-handed alpha
Helix 73	73	F	144	146	Right-handed 310
Helix 74	74	F	147	166	Right-handed alpha
Helix 75	75	F	168	176	Right-handed alpha
Helix 76	76	F	177	185	Right-handed alpha
Helix 77	77	F	189	195	Right-handed alpha
Helix 78	78	F	200	210	Right-handed alpha
Helix 79	79	G	8	13	Right-handed 310
Helix 80	80	G	14	27	Right-handed alpha
Helix 81	81	G	28	30	Right-handed 310
Helix 82	82	G	48	62	Right-handed alpha
Helix 83	83	G	75	84	Right-handed alpha
Helix 84	84	G	95	106	Right-handed alpha
Helix 85	85	G	122	136	Right-handed alpha
Helix 86	86	G	144	146	Right-handed 310
Helix 87	87	G	147	166	Right-handed alpha
Helix 88	88	G	168	176	Right-handed alpha
Helix 89	89	G	177	185	Right-handed alpha
Helix 90	90	G	189	195	Right-handed alpha
Helix 91	91	G	200	210	Right-handed alpha
Helix 92	92	H	8	13	Right-handed 310
Helix 93	93	H	14	27	Right-handed alpha
Helix 94	94	H	28	30	Right-handed 310
Helix 95	95	H	48	63	Right-handed alpha
Helix 96	96	H	75	83	Right-handed alpha
Helix 97	97	H	95	106	Right-handed alpha
Helix 98	98	H	122	136	Right-handed alpha
Helix 99	99	H	144	146	Right-handed 310
Helix 100	100	H	147	166	Right-handed alpha
Helix 101	101	H	168	176	Right-handed alpha
Helix 102	102	H	177	185	Right-handed alpha
Helix 103	103	H	189	195	Right-handed alpha
Helix 104	104	H	200	209	Right-handed alpha
Helix 105	105	I	8	13	Right-handed 310
Helix 106	106	I	14	27	Right-handed alpha
Helix 107	107	I	28	30	Right-handed 310
Helix 108	108	I	48	63	Right-handed alpha
Helix 109	109	I	75	84	Right-handed alpha
Helix 110	110	I	95	106	Right-handed alpha
Helix 111	111	I	122	136	Right-handed alpha
Helix 112	112	I	144	146	Right-handed 310
Helix 113	113	I	147	166	Right-handed alpha
Helix 114	114	I	168	176	Right-handed alpha
Helix 115	115	I	177	185	Right-handed alpha
Helix 116	116	I	189	198	Right-handed alpha
Helix 117	117	I	200	210	Right-handed alpha
Helix 118	118	J	8	13	Right-handed 310
Helix 119	119	J	14	27	Right-handed alpha
Helix 120	120	J	28	30	Right-handed 310
Helix 121	121	J	48	62	Right-handed alpha
Helix 122	122	J	75	84	Right-handed alpha
Helix 123	123	J	95	106	Right-handed alpha
Helix 124	124	J	122	136	Right-handed alpha
Helix 125	125	J	144	146	Right-handed 310
Helix 126	126	J	147	166	Right-handed alpha
Helix 127	127	J	168	176	Right-handed alpha
Helix 128	128	J	177	185	Right-handed alpha
Helix 129	129	J	189	195	Right-handed alpha
Helix 130	130	J	200	209	Right-handed alpha
Helix 131	131	K	8	13	Right-handed 310
Helix 132	132	K	14	27	Right-handed alpha
Helix 133	133	K	28	30	Right-handed 310
Helix 134	134	K	48	63	Right-handed alpha
Helix 135	135	K	75	83	Right-handed alpha
Helix 136	136	K	95	106	Right-handed alpha
Helix 137	137	K	122	135	Right-handed alpha
Helix 138	138	K	144	146	Right-handed 310
Helix 139	139	K	147	166	Right-handed alpha
Helix 140	140	K	168	176	Right-handed alpha
Helix 141	141	K	177	185	Right-handed alpha
Helix 142	142	K	189	195	Right-handed alpha
Helix 143	143	K	200	209	Right-handed alpha
Helix 144	144	L	8	13	Right-handed 310
Helix 145	145	L	14	27	Right-handed alpha
Helix 146	146	L	28	30	Right-handed 310
Helix 147	147	L	48	63	Right-handed alpha
Helix 148	148	L	75	83	Right-handed alpha
Helix 149	149	L	95	106	Right-handed alpha
Helix 150	150	L	122	135	Right-handed alpha
Helix 151	151	L	144	146	Right-handed 310
Helix 152	152	L	147	166	Right-handed alpha
Helix 153	153	L	168	176	Right-handed alpha
Helix 154	154	L	177	185	Right-handed alpha
Helix 155	155	L	189	195	Right-handed alpha
Helix 156	156	L	200	210	Right-handed alpha
Helix 157	157	M	8	13	Right-handed 310
Helix 158	158	M	14	27	Right-handed alpha
Helix 159	159	M	48	62	Right-handed alpha
Helix 160	160	M	75	84	Right-handed alpha
Helix 161	161	M	95	106	Right-handed alpha
Helix 162	162	M	122	136	Right-handed alpha
Helix 163	163	M	144	146	Right-handed 310
Helix 164	164	M	147	166	Right-handed alpha
Helix 165	165	M	168	176	Right-handed alpha
Helix 166	166	M	177	185	Right-handed alpha
Helix 167	167	M	189	195	Right-handed alpha
Helix 168	168	M	200	209	Right-handed alpha
Helix 169	169	N	8	13	Right-handed 310
Helix 170	170	N	14	27	Right-handed alpha
Helix 171	171	N	28	30	Right-handed 310
Helix 172	172	N	48	63	Right-handed alpha
Helix 173	173	N	75	84	Right-handed alpha
Helix 174	174	N	95	106	Right-handed alpha
Helix 175	175	N	122	136	Right-handed alpha
Helix 176	176	N	147	166	Right-handed alpha
Helix 177	177	N	168	176	Right-handed alpha
Helix 178	178	N	177	185	Right-handed alpha
Helix 179	179	N	189	195	Right-handed alpha
Helix 180	180	N	200	210	Right-handed alpha
Helix 181	181	O	8	13	Right-handed 310
Helix 182	182	O	14	27	Right-handed alpha
Helix 183	183	O	28	30	Right-handed 310
Helix 184	184	O	48	62	Right-handed alpha
Helix 185	185	O	75	84	Right-handed alpha
Helix 186	186	O	95	106	Right-handed alpha
Helix 187	187	O	122	136	Right-handed alpha
Helix 188	188	O	147	166	Right-handed alpha
Helix 189	189	O	168	176	Right-handed alpha
Helix 190	190	O	177	185	Right-handed alpha
Helix 191	191	O	189	195	Right-handed alpha
Helix 192	192	O	200	209	Right-handed alpha
Helix 193	193	P	8	13	Right-handed 310
Helix 194	194	P	14	27	Right-handed alpha
Helix 195	195	P	48	62	Right-handed alpha
Helix 196	196	P	75	84	Right-handed alpha
Helix 197	197	P	95	106	Right-handed alpha
Helix 198	198	P	122	135	Right-handed alpha
Helix 199	199	P	144	146	Right-handed 310
Helix 200	200	P	147	166	Right-handed alpha
Helix 201	201	P	168	176	Right-handed alpha
Helix 202	202	P	177	185	Right-handed alpha
Helix 203	203	P	189	195	Right-handed alpha
Helix 204	204	P	200	209	Right-handed alpha

There are 16 sheets in PDB entry 3C5Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	2	5	parallel
Strand 3	A	67	72	parallel
Strand 4	A	110	114	parallel
Strand 5	A	90	92	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	2	5	parallel
Strand 3	B	67	72	parallel
Strand 4	B	110	114	parallel
Strand 5	B	90	92	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	2	5	parallel
Strand 3	C	67	72	parallel
Strand 4	C	110	114	parallel
Strand 5	C	90	92	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	2	5	parallel
Strand 3	D	67	72	parallel
Strand 4	D	110	114	parallel
Strand 5	D	90	92	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	2	5	parallel
Strand 3	E	67	72	parallel
Strand 4	E	110	114	parallel
Strand 5	E	90	92	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	35	first strand
Strand 2	F	2	5	parallel
Strand 3	F	67	72	parallel
Strand 4	F	110	114	parallel
Strand 5	F	90	92	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	35	first strand
Strand 2	G	2	5	parallel
Strand 3	G	67	72	parallel
Strand 4	G	110	114	parallel
Strand 5	G	90	92	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	35	first strand
Strand 2	H	2	5	parallel
Strand 3	H	67	72	parallel
Strand 4	H	110	114	parallel
Strand 5	H	90	92	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	35	first strand
Strand 2	I	2	5	parallel
Strand 3	I	67	72	parallel
Strand 4	I	110	114	parallel
Strand 5	I	90	92	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	35	first strand
Strand 2	J	2	5	parallel
Strand 3	J	67	72	parallel
Strand 4	J	110	114	parallel
Strand 5	J	90	92	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	32	35	first strand
Strand 2	K	2	5	parallel
Strand 3	K	67	72	parallel
Strand 4	K	110	114	parallel
Strand 5	K	90	92	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	35	first strand
Strand 2	L	2	5	parallel
Strand 3	L	67	72	parallel
Strand 4	L	110	114	parallel
Strand 5	L	90	92	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	32	35	first strand
Strand 2	M	2	5	parallel
Strand 3	M	67	72	parallel
Strand 4	M	110	114	parallel
Strand 5	M	90	92	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	35	first strand
Strand 2	N	2	5	parallel
Strand 3	N	67	72	parallel
Strand 4	N	110	114	parallel
Strand 5	N	90	92	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	32	35	first strand
Strand 2	O	2	5	parallel
Strand 3	O	67	72	parallel
Strand 4	O	110	114	parallel
Strand 5	O	90	92	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	32	35	first strand
Strand 2	P	2	5	parallel
Strand 3	P	67	72	parallel
Strand 4	P	110	114	parallel
Strand 5	P	90	92	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3C5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
3C5Y