Analysis of interatomic Contacts of Structural Units in PDB entry:
3C98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C98 entry

There are 2 chains in PDB entry 3C98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4ILE 592
B
 LYS 2VAL 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 3C98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
18 23Right-handed alpha
Helix 3
3
A
34 43Right-handed alpha
Helix 4
4
A
46 51Right-handed alpha
Helix 5
5
A
80 90Right-handed alpha
Helix 6
6
A
91 92Right-handed 310
Helix 7
7
A
93 97Right-handed 310
Helix 8
8
A
111 120Right-handed alpha
Helix 9
9
A
121 125Right-handed 310
Helix 10
10
A
151 158Right-handed alpha
Helix 11
11
A
159 162Right-handed 310
Helix 12
12
A
165 184Right-handed alpha
Helix 13
13
A
195 216Right-handed alpha
Helix 14
14
A
236 238Right-handed 310
Helix 15
15
A
248 257Right-handed alpha
Helix 16
16
A
285 292Right-handed alpha
Helix 17
17
A
295 314Right-handed alpha
Helix 18
18
A
334 336Right-handed 310
Helix 19
19
A
337 359Right-handed alpha
Helix 20
20
A
360 375Right-handed alpha
Helix 21
21
A
386 395Right-handed alpha
Helix 22
22
A
400 415Right-handed alpha
Helix 23
23
A
419 431Right-handed alpha
Helix 24
24
A
433 443Right-handed alpha
Helix 25
25
A
444 447Right-handed 310
Helix 26
26
A
480 491Right-handed alpha
Helix 27
27
A
547 561Right-handed alpha
Helix 28
28
A
574 583Right-handed alpha
Helix 29
29
B
30 63Right-handed alpha
Helix 30
30
B
69 105Right-handed alpha
Helix 31
31
B
110 157Right-handed alpha
Helix 32
32
B
161 171Right-handed alpha
Helix 33
33
B
189 211Right-handed alpha
Helix 34
34
B
212 227Right-handed alpha
Helix 35
35
B
228 231Right-handed 310
Helix 36
36
B
232 239Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3C98. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
29 33parallel
Strand 3
A
73 77parallel
Strand 4
A
102 106parallel
Strand 5
A
127 132parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
564 569parallel
Strand 4
A
536 542parallel
Strand 5
A
229 234parallel
Strand 6
A
188 191parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 269first strand
Strand 2
A
274 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
572 573parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il