Analysis of interatomic Contacts of Structural Units in PDB entry:
3CF5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3CF5 entry

There are 34 chains in PDB entry 3CF5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ALA 2	LYS 54
2	MET 1	ASP 46
3	PRO 2	ARG 64
4	MET 1	GLY 37
5	ILE 1	ALA 2
5	ALA 4	SER 5
5	THR 7	THR 7
5	THR 12	THR 12
A	LEU 33	THR 272
B	MET 1	SER 205
C	ALA 2	GLU 198
D	GLN 3	LYS 179
E	GLY 5	LYS 175
F	MET 1	ALA 144
G	LYS 30	LEU 171
H	MET 1	LEU 134
I	HIS 4	GLU 144
J	LYS 6	ALA 141
K	HIS 3	LEU 115
L	ARG 8	GLY 111
M	GLN 2	GLU 109
N	PRO 2	GLN 118
O	ILE 5	ILE 98
P	PHE 8	LYS 134
Q	SER 2	GLN 94
R	PRO 4	THR 113
S	MET 1	ARG 175
T	ALA 2	GLN 85
U	THR 8	GLU 79
V	MET 1	GLN 66
W	MET 1	GLU 55
X	G 1	A 2877
Y	ALA 2	ALA 59
Z	C 2	U 123

There are 71 helices in PDB entry 3CF5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	38	43	Right-handed alpha
Helix 2	2	B	55	59	Right-handed 310
Helix 3	3	B	60	69	Right-handed alpha
Helix 4	4	B	116	121	Right-handed alpha
Helix 5	5	C	23	39	Right-handed alpha
Helix 6	6	C	96	116	Right-handed alpha
Helix 7	7	C	130	139	Right-handed alpha
Helix 8	8	C	154	159	Right-handed alpha
Helix 9	9	C	176	183	Right-handed alpha
Helix 10	10	D	5	10	Right-handed alpha
Helix 11	11	D	12	18	Right-handed alpha
Helix 12	12	D	48	61	Right-handed alpha
Helix 13	13	D	92	106	Right-handed alpha
Helix 14	14	D	162	173	Right-handed alpha
Helix 15	15	E	59	82	Right-handed alpha
Helix 16	16	E	137	149	Right-handed alpha
Helix 17	17	F	27	31	Right-handed 310
Helix 18	18	F	34	39	Right-handed alpha
Helix 19	19	F	40	45	Right-handed alpha
Helix 20	20	F	75	80	Right-handed alpha
Helix 21	21	F	102	108	Right-handed alpha
Helix 22	22	F	120	135	Right-handed alpha
Helix 23	23	G	50	64	Right-handed alpha
Helix 24	24	G	122	132	Right-handed alpha
Helix 25	25	G	138	146	Right-handed alpha
Helix 26	26	G	155	160	Right-handed 310
Helix 27	27	H	116	121	Right-handed alpha
Helix 28	28	H	123	130	Right-handed alpha
Helix 29	29	I	76	81	Right-handed alpha
Helix 30	30	I	94	99	Right-handed alpha
Helix 31	31	I	126	131	Right-handed alpha
Helix 32	32	I	133	136	Right-handed 310
Helix 33	33	J	45	59	Right-handed alpha
Helix 34	34	J	112	116	Right-handed 310
Helix 35	35	J	119	125	Right-handed alpha
Helix 36	36	K	13	32	Right-handed alpha
Helix 37	37	K	38	56	Right-handed alpha
Helix 38	38	K	59	67	Right-handed alpha
Helix 39	39	K	72	82	Right-handed alpha
Helix 40	40	K	82	87	Right-handed alpha
Helix 41	41	K	88	90	Right-handed 310
Helix 42	42	L	9	19	Right-handed alpha
Helix 43	43	L	67	80	Right-handed alpha
Helix 44	44	L	97	111	Right-handed alpha
Helix 45	45	M	8	15	Right-handed alpha
Helix 46	46	M	16	21	Right-handed 310
Helix 47	47	M	60	63	Right-handed 310
Helix 48	48	M	104	108	Right-handed 310
Helix 49	49	N	8	21	Right-handed alpha
Helix 50	50	N	25	30	Right-handed 310
Helix 51	51	N	31	70	Right-handed alpha
Helix 52	52	N	75	86	Right-handed alpha
Helix 53	53	N	94	101	Right-handed alpha
Helix 54	54	N	102	115	Right-handed alpha
Helix 55	55	P	11	18	Right-handed alpha
Helix 56	56	P	34	46	Right-handed alpha
Helix 57	57	P	49	60	Right-handed alpha
Helix 58	58	P	64	80	Right-handed alpha
Helix 59	59	Q	13	21	Right-handed alpha
Helix 60	60	Q	34	44	Right-handed alpha
Helix 61	61	S	10	15	Right-handed alpha
Helix 62	62	S	35	43	Right-handed alpha
Helix 63	63	U	63	72	Right-handed alpha
Helix 64	64	V	3	8	Right-handed alpha
Helix 65	65	V	10	17	Right-handed alpha
Helix 66	66	V	20	35	Right-handed alpha
Helix 67	67	V	39	61	Right-handed alpha
Helix 68	68	W	13	23	Right-handed alpha
Helix 69	69	W	37	47	Right-handed alpha
Helix 70	70	W	48	50	Right-handed 310
Helix 71	71	Y	12	21	Right-handed alpha

There are 47 sheets in PDB entry 3CF5. Click on sheet of interest to get list of strands forming it: 4A, AA, AB, AC, AD, BA, BB, BC, BD, BE, CA, A, EA, EB, EC, FA, FB, GA, GB, HA, HB, IA, IB, JA, JB, KA, LA, MA, MB, MC, OA, OB, PA, PB, QA, RA, RB, SA, SB, SC, SD, SE, TA, TB, UA, WA, YA,

There are 3 strands in 4A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	15	19	first strand
Strand 2	4	22	26	anti-parallel
Strand 3	4	34	35	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	61	62	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	102	106	parallel
Strand 3	A	92	97	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	116	118	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	141	143	anti-parallel
Strand 3	A	163	165	anti-parallel
Strand 4	A	175	177	anti-parallel
Strand 5	A	181	183	anti-parallel
Strand 6	A	267	268	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	185	186	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	105	107	anti-parallel
Strand 3	B	195	199	anti-parallel
Strand 4	B	3	12	anti-parallel
Strand 5	B	23	27	anti-parallel
Strand 6	B	181	185	anti-parallel
Strand 7	B	174	176	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	19	20	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	31	37	anti-parallel
Strand 4	B	89	90	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	170	171	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	114	first strand
Strand 2	B	158	161	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	148	150	parallel
Strand 3	C	185	187	parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	31	35	anti-parallel
Strand 3	D	154	158	anti-parallel
Strand 4	D	128	130	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	25	26	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	124	first strand
Strand 2	E	130	135	anti-parallel
Strand 3	E	83	88	anti-parallel
Strand 4	E	163	164	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	113	114	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	55	59	anti-parallel
Strand 3	F	66	69	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	99	first strand
Strand 2	F	136	138	parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	45	first strand
Strand 2	G	79	83	parallel
Strand 3	G	148	149	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	103	first strand
Strand 2	G	111	115	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	16	24	anti-parallel
Strand 3	H	50	58	anti-parallel
Strand 4	H	69	76	anti-parallel
Strand 5	H	95	99	anti-parallel
Strand 6	H	8	10	parallel

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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	82	first strand
Strand 2	H	88	91	anti-parallel
Strand 3	M	75	82	anti-parallel
Strand 4	M	65	72	anti-parallel
Strand 5	M	54	56	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	75	first strand
Strand 2	I	107	108	parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	120	first strand
Strand 2	I	138	140	parallel

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There are 3 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	105	first strand
Strand 2	J	34	37	anti-parallel
Strand 3	J	130	133	anti-parallel

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There are 3 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	44	first strand
Strand 2	J	93	96	anti-parallel
Strand 3	J	74	75	anti-parallel

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There are 3 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	37	first strand
Strand 2	K	110	114	anti-parallel
Strand 3	K	96	99	anti-parallel

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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	50	first strand
Strand 2	L	42	44	anti-parallel
Strand 3	L	28	29	anti-parallel
Strand 4	L	88	89	parallel

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There are 2 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	48	51	first strand
Strand 2	M	30	36	anti-parallel

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There are 2 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	88	90	first strand
Strand 2	M	30	36	anti-parallel

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There are 2 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	96	first strand
Strand 2	M	30	36	anti-parallel

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There are 4 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	17	20	first strand
Strand 2	O	89	95	anti-parallel
Strand 3	O	56	65	anti-parallel
Strand 4	O	32	34	anti-parallel

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There are 2 strands in OB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	69	74	first strand
Strand 2	O	81	86	anti-parallel

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There are 3 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	25	31	first strand
Strand 2	P	122	128	anti-parallel
Strand 3	P	92	99	anti-parallel

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There are 2 strands in PB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	103	108	first strand
Strand 2	P	114	119	anti-parallel

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There are 4 strands in QA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	10	first strand
Strand 2	Q	24	28	anti-parallel
Strand 3	Q	77	82	anti-parallel
Strand 4	Q	50	52	anti-parallel

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There are 3 strands in RA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	21	24	first strand
Strand 2	R	32	40	anti-parallel
Strand 3	R	45	48	anti-parallel

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There are 2 strands in RB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	54	55	first strand
Strand 2	R	70	71	anti-parallel

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There are 3 strands in SA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	23	24	first strand
Strand 2	S	83	85	parallel
Strand 3	S	64	66	anti-parallel

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There are 2 strands in SB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	70	71	first strand
Strand 2	S	78	80	anti-parallel

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There are 2 strands in SC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	93	97	first strand
Strand 2	S	119	123	anti-parallel

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There are 2 strands in SD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	99	100	first strand
Strand 2	S	135	136	parallel

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There are 3 strands in SE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	112	114	first strand
Strand 2	S	167	172	anti-parallel
Strand 3	S	146	148	anti-parallel

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There are 3 strands in TA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	36	38	first strand
Strand 2	T	59	61	anti-parallel
Strand 3	T	51	52	anti-parallel

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There are 3 strands in TB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	46	47	first strand
Strand 2	T	76	81	parallel
Strand 3	T	67	72	anti-parallel

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There are 2 strands in UA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	23	24	first strand
Strand 2	U	36	37	anti-parallel

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There are 2 strands in WA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	2	4	first strand
Strand 2	W	31	33	anti-parallel

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There are 2 strands in YA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	30	32	first strand
Strand 2	Y	39	41	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3CF5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3CF5