Analysis of interatomic Contacts of Structural Units in PDB entry:
3CVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CVW entry

There are 4 chains in PDB entry 3CVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
A 1 G 7
C
G 10 T 15
D
T 1 G 15
A
GLN 4ARG 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3CVW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
49 54Right-handed alpha
Helix 3
3
A
57 77Right-handed alpha
Helix 4
4
A
88 101Right-handed alpha
Helix 5
5
A
112 129Right-handed alpha
Helix 6
6
A
143 151Right-handed alpha
Helix 7
7
A
158 167Right-handed alpha
Helix 8
8
A
190 196Right-handed alpha
Helix 9
9
A
204 209Right-handed alpha
Helix 10
10
A
211 215Right-handed 310
Helix 11
11
A
223 235Right-handed alpha
Helix 12
12
A
237 243Right-handed alpha
Helix 13
13
A
245 249Right-handed 310
Helix 14
14
A
261 267Right-handed alpha
Helix 15
15
A
271 285Right-handed alpha
Helix 16
16
A
295 313Right-handed alpha
Helix 17
17
A
333 342Right-handed alpha
Helix 18
18
A
347 360Right-handed alpha
Helix 19
19
A
364 376Right-handed alpha
Helix 20
20
A
383 395Right-handed alpha
Helix 21
21
A
399 411Right-handed alpha
Helix 22
22
A
436 443Right-handed alpha
Helix 23
23
A
444 447Right-handed 310
Helix 24
24
A
456 460Right-handed 310
Helix 25
25
A
461 468Right-handed alpha
Helix 26
26
A
482 505Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3CVW.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 86first strand
Strand 2
A
38 46parallel
Strand 3
A
6 12parallel
Strand 4
A
102 107parallel
Strand 5
A
132 133parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il