Analysis of interatomic Contacts of Structural Units in PDB entry:
3D02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D02 entry

There is 1 chain in PDB entry 3D02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3D02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 57Right-handed alpha
Helix 2
2
A
70 84Right-handed alpha
Helix 3
3
A
95 109Right-handed alpha
Helix 4
4
A
132 148Right-handed alpha
Helix 5
5
A
163 181Right-handed alpha
Helix 6
6
A
196 211Right-handed alpha
Helix 7
7
A
223 235Right-handed alpha
Helix 8
8
A
248 258Right-handed alpha
Helix 9
9
A
268 285Right-handed alpha
Helix 10
10
A
322 326Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3D02. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
29 34parallel
Strand 3
A
88 91parallel
Strand 4
A
112 116parallel
Strand 5
A
126 129parallel
Strand 6
A
309 311parallel
Strand 7
A
302 304anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
152 157parallel
Strand 3
A
214 219parallel
Strand 4
A
242 245parallel
Strand 5
A
263 266parallel
Strand 6
A
316 318anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
299 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il