Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0G entry

There are 3 chains in PDB entry 3D0G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 19ASP 615
B
SER 19ASP 615
E
PRO 324TYR 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 3D0G. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
20 53Right-handed alpha
Helix 2
2
A
55 81Right-handed alpha
Helix 3
3
A
82 83Right-handed 310
Helix 4
4
A
84 88Right-handed 310
Helix 5
5
A
90 101Right-handed alpha
Helix 6
6
A
104 108Right-handed 310
Helix 7
7
A
109 130Right-handed alpha
Helix 8
8
A
146 155Right-handed alpha
Helix 9
9
A
157 194Right-handed alpha
Helix 10
10
A
198 205Right-handed alpha
Helix 11
11
A
206 208Right-handed 310
Helix 12
12
A
218 232Right-handed alpha
Helix 13
13
A
233 252Right-handed alpha
Helix 14
14
A
265 267Right-handed 310
Helix 15
15
A
275 277Right-handed 310
Helix 16
16
A
278 283Right-handed alpha
Helix 17
17
A
293 299Right-handed alpha
Helix 18
18
A
303 318Right-handed alpha
Helix 19
19
A
324 331Right-handed alpha
Helix 20
20
A
365 385Right-handed alpha
Helix 21
21
A
389 393Right-handed 310
Helix 22
22
A
400 414Right-handed alpha
Helix 23
23
A
414 421Right-handed alpha
Helix 24
24
A
431 447Right-handed alpha
Helix 25
25
A
448 465Right-handed alpha
Helix 26
26
A
469 471Right-handed 310
Helix 27
27
A
472 484Right-handed alpha
Helix 28
28
A
498 502Right-handed 310
Helix 29
29
A
503 508Right-handed alpha
Helix 30
30
A
513 532Right-handed alpha
Helix 31
31
A
538 542Right-handed 310
Helix 32
32
A
547 559Right-handed alpha
Helix 33
33
A
565 572Right-handed alpha
Helix 34
34
A
581 588Right-handed alpha
Helix 35
35
A
588 599Right-handed alpha
Helix 36
36
B
21 52Right-handed alpha
Helix 37
37
B
55 82Right-handed alpha
Helix 38
38
B
90 101Right-handed alpha
Helix 39
39
B
110 130Right-handed alpha
Helix 40
40
B
146 155Right-handed alpha
Helix 41
41
B
157 194Right-handed alpha
Helix 42
42
B
198 205Right-handed alpha
Helix 43
43
B
206 208Right-handed 310
Helix 44
44
B
219 252Right-handed alpha
Helix 45
45
B
265 267Right-handed 310
Helix 46
46
B
275 277Right-handed 310
Helix 47
47
B
278 283Right-handed alpha
Helix 48
48
B
293 300Right-handed alpha
Helix 49
49
B
303 319Right-handed alpha
Helix 50
50
B
324 331Right-handed alpha
Helix 51
51
B
365 385Right-handed alpha
Helix 52
52
B
389 393Right-handed 310
Helix 53
53
B
397 413Right-handed alpha
Helix 54
54
B
414 421Right-handed alpha
Helix 55
55
B
431 465Right-handed alpha
Helix 56
56
B
469 471Right-handed 310
Helix 57
57
B
472 484Right-handed alpha
Helix 58
58
B
499 502Right-handed 310
Helix 59
59
B
503 508Right-handed alpha
Helix 60
60
B
513 533Right-handed alpha
Helix 61
61
B
538 542Right-handed 310
Helix 62
62
B
547 559Right-handed alpha
Helix 63
63
B
565 575Right-handed alpha
Helix 64
64
B
581 599Right-handed alpha
Helix 65
65
B
600 602Right-handed 310
Helix 66
66
E
324 328Right-handed 310
Helix 67
67
E
336 340Right-handed 310
Helix 68
68
E
352 357Right-handed alpha
Helix 69
69
E
392 397Right-handed 310
Helix 70
70
E
404 409Right-handed alpha
Helix 71
71
E
425 430Right-handed alpha
Helix 72
72
E
488 491Right-handed 310
Helix 73
73
F
324 328Right-handed 310
Helix 74
74
F
336 340Right-handed 310
Helix 75
75
F
352 357Right-handed alpha
Helix 76
76
F
392 397Right-handed 310
Helix 77
77
F
404 409Right-handed alpha
Helix 78
78
F
425 430Right-handed alpha
Helix 79
79
F
488 491Right-handed 310
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There are 10 sheets in PDB entry 3D0G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 134first strand
Strand 2
A
137 142anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
131 134first strand
Strand 2
B
137 143anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
347 352first strand
Strand 2
B
355 359anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
341 344first strand
Strand 2
E
383 390anti-parallel
Strand 3
E
493 500anti-parallel
Strand 4
E
419 424anti-parallel
Strand 5
E
363 366anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
439 441first strand
Strand 2
E
478 480anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
341 344first strand
Strand 2
F
383 390anti-parallel
Strand 3
F
493 500anti-parallel
Strand 4
F
419 424anti-parallel
Strand 5
F
363 366anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
439 441first strand
Strand 2
F
478 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il