Analysis of interatomic Contacts of Structural Units in PDB entry:
3D59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D59 entry

There are 2 chains in PDB entry 3D59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 54THR 425
B
THR 54GLN 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3D59. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
100 112Right-handed alpha
Helix 2
2
A
114 126Right-handed alpha
Helix 3
3
A
160 170Right-handed alpha
Helix 4
4
A
192 199Right-handed alpha
Helix 5
5
A
210 212Right-handed 310
Helix 6
6
A
213 241Right-handed alpha
Helix 7
7
A
254 259Right-handed 310
Helix 8
8
A
273 286Right-handed alpha
Helix 9
9
A
303 309Right-handed 310
Helix 10
10
A
324 333Right-handed alpha
Helix 11
11
A
350 360Right-handed 310
Helix 12
12
A
362 369Right-handed alpha
Helix 13
13
A
376 397Right-handed alpha
Helix 14
14
A
401 404Right-handed 310
Helix 15
15
A
405 410Right-handed alpha
Helix 16
16
B
100 112Right-handed alpha
Helix 17
17
B
115 126Right-handed alpha
Helix 18
18
B
160 170Right-handed alpha
Helix 19
19
B
192 198Right-handed alpha
Helix 20
20
B
210 212Right-handed 310
Helix 21
21
B
213 241Right-handed alpha
Helix 22
22
B
254 259Right-handed 310
Helix 23
23
B
273 286Right-handed alpha
Helix 24
24
B
305 309Right-handed 310
Helix 25
25
B
324 334Right-handed alpha
Helix 26
26
B
350 360Right-handed 310
Helix 27
27
B
362 369Right-handed alpha
Helix 28
28
B
376 397Right-handed alpha
Helix 29
29
B
401 404Right-handed 310
Helix 30
30
B
405 410Right-handed alpha
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There are 6 sheets in PDB entry 3D59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
133 134first strand
Strand 2
A
64 72parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
144 150parallel
Strand 6
A
262 272parallel
Strand 7
A
291 295parallel
Strand 8
A
314 319parallel
Strand 9
A
341 346parallel
Strand 10
A
416 418anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
95 96first strand
Strand 2
A
129 130anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 189first strand
Strand 2
A
202 205anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
133 134first strand
Strand 2
B
65 72parallel
Strand 3
B
79 86anti-parallel
Strand 4
B
173 177anti-parallel
Strand 5
B
144 150parallel
Strand 6
B
262 272parallel
Strand 7
B
291 295parallel
Strand 8
B
314 319parallel
Strand 9
B
341 346parallel
Strand 10
B
416 418anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
95 96first strand
Strand 2
B
129 130anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
186 189first strand
Strand 2
B
202 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il