Analysis of interatomic Contacts of Structural Units in PDB entry:
3D9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D9M entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 3D9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2GLU 139
B
 MET 1HIS 140
Y
 TYR 1PRO 3
Z
 PRO -1THR 4
Z
 PRO 6SER 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3D9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
14 17Right-handed 310
Helix 3
3
A
22 36Right-handed alpha
Helix 4
4
A
39 54Right-handed alpha
Helix 5
5
A
55 57Right-handed 310
Helix 6
6
A
58 78Right-handed alpha
Helix 7
7
A
83 90Right-handed alpha
Helix 8
8
A
91 100Right-handed alpha
Helix 9
9
A
101 102Right-handed 310
Helix 10
10
A
103 105Right-handed 310
Helix 11
11
A
106 120Right-handed alpha
Helix 12
12
A
124 139Right-handed alpha
Helix 13
13
B
1 13Right-handed alpha
Helix 14
14
B
14 17Right-handed 310
Helix 15
15
B
22 36Right-handed alpha
Helix 16
16
B
39 54Right-handed alpha
Helix 17
17
B
55 57Right-handed 310
Helix 18
18
B
58 78Right-handed alpha
Helix 19
19
B
83 90Right-handed alpha
Helix 20
20
B
91 100Right-handed alpha
Helix 21
21
B
101 102Right-handed 310
Helix 22
22
B
103 105Right-handed 310
Helix 23
23
B
106 120Right-handed alpha
Helix 24
24
B
124 139Right-handed alpha
Back to top of page
There are no sheets in PDB entry 3D9M
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il