Analysis of interatomic Contacts of Structural Units in PDB entry:
3D9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D9T entry

There are 4 chains in PDB entry 3D9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 257TYR 346
B
 GLY 252TYR 346
C
 ALA 1GLN 5
D
 ALA 1GLU 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3D9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
257 261Right-handed 310
Helix 2
2
A
262 269Right-handed alpha
Helix 3
3
A
270 273Right-handed 310
Helix 4
4
A
280 287Right-handed alpha
Helix 5
5
A
315 324Right-handed alpha
Helix 6
6
A
327 335Right-handed alpha
Helix 7
7
A
335 343Right-handed alpha
Helix 8
8
B
257 261Right-handed 310
Helix 9
9
B
262 269Right-handed alpha
Helix 10
10
B
270 273Right-handed 310
Helix 11
11
B
280 287Right-handed alpha
Helix 12
12
B
315 324Right-handed alpha
Helix 13
13
B
327 335Right-handed alpha
Helix 14
14
B
335 344Right-handed alpha
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There are 2 sheets in PDB entry 3D9T. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
298 300anti-parallel
Strand 3
A
306 308anti-parallel
Strand 4
C
2 4anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
298 300anti-parallel
Strand 3
B
306 308anti-parallel
Strand 4
D
2 4anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il