Analysis of interatomic Contacts of Structural Units in PDB entry:
3DC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DC6 entry

There are 2 chains in PDB entry 3DC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 1GLN 197
C
MET 0GLN 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3DC6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
29 51Right-handed alpha
Helix 3
3
A
53 60Right-handed alpha
Helix 4
4
A
60 80Right-handed alpha
Helix 5
5
A
89 101Right-handed alpha
Helix 6
6
A
102 116Right-handed alpha
Helix 7
7
A
144 150Right-handed alpha
Helix 8
8
A
160 163Right-handed 310
Helix 9
9
A
164 169Right-handed alpha
Helix 10
10
A
171 179Right-handed alpha
Helix 11
11
A
180 183Right-handed 310
Helix 12
12
A
184 196Right-handed alpha
Helix 13
13
C
19 29Right-handed alpha
Helix 14
14
C
29 52Right-handed alpha
Helix 15
15
C
53 60Right-handed alpha
Helix 16
16
C
60 80Right-handed alpha
Helix 17
17
C
89 101Right-handed alpha
Helix 18
18
C
102 116Right-handed alpha
Helix 19
19
C
144 150Right-handed alpha
Helix 20
20
C
160 163Right-handed 310
Helix 21
21
C
164 169Right-handed alpha
Helix 22
22
C
171 179Right-handed alpha
Helix 23
23
C
180 183Right-handed 310
Helix 24
24
C
184 196Right-handed alpha
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There are 2 sheets in PDB entry 3DC6. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
133 140first strand
Strand 2
A
121 128anti-parallel
Strand 3
A
152 158anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
133 140first strand
Strand 2
C
121 128anti-parallel
Strand 3
C
152 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il