Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPR entry

There are 5 chains in PDB entry 3DPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 15ALA 283
B
 ARG 12GLN 261
C
 GLY 1GLN 237
D
 ALA 2LEU 43
E
 CYS 3ASN 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3DPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 51Right-handed alpha
Helix 2
2
A
62 65Right-handed 310
Helix 3
3
A
66 72Right-handed alpha
Helix 4
4
A
105 112Right-handed alpha
Helix 5
5
A
158 163Right-handed 310
Helix 6
6
A
206 210Right-handed 310
Helix 7
7
B
35 37Right-handed 310
Helix 8
8
B
56 60Right-handed 310
Helix 9
9
B
84 88Right-handed 310
Helix 10
10
B
89 98Right-handed alpha
Helix 11
11
B
143 148Right-handed 310
Helix 12
12
B
149 153Right-handed 310
Helix 13
13
B
163 167Right-handed 310
Helix 14
14
B
171 175Right-handed 310
Helix 15
15
C
42 46Right-handed 310
Helix 16
16
C
64 67Right-handed 310
Helix 17
17
C
93 96Right-handed 310
Helix 18
18
C
97 104Right-handed alpha
Helix 19
19
C
143 149Right-handed alpha
Helix 20
20
D
34 38Right-handed 310
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There are 13 sheets in PDB entry 3DPR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
A
229 247anti-parallel
Strand 3
A
129 131anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
229 247anti-parallel
Strand 3
A
114 126anti-parallel
Strand 4
A
179 182anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 40first strand
Strand 2
A
229 247anti-parallel
Strand 3
A
114 126anti-parallel
Strand 4
A
191 192anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
167 172anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
21 24anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
199 204parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
239 256anti-parallel
Strand 5
B
69 72anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
239 256anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
213 214anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
78 80anti-parallel
Strand 3
B
223 233anti-parallel
Strand 4
B
118 126anti-parallel
Strand 5
B
189 192anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
205 214anti-parallel
Strand 3
C
69 73anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
205 214anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
162 167anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
187 192anti-parallel
Strand 3
C
127 134anti-parallel
Strand 4
C
151 157anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 177first strand
Strand 2
C
106 110anti-parallel
Strand 3
C
219 223anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
D
26 27anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il