Analysis of interatomic Contacts of Structural Units in PDB entry:
3DTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DTP entry

There are 6 chains in PDB entry 3DTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 972
B
 ALA 2LYS 974
C
 PHE 3GLY 150
D
 PHE 3GLY 150
E
 MET 1ALA 196
F
 MET 1ALA 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 3DTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
23 28Right-handed alpha
Helix 3
3
A
29 31Right-handed 310
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
88 92Right-handed 310
Helix 6
6
A
96 101Right-handed alpha
Helix 7
7
A
104 109Right-handed alpha
Helix 8
8
A
134 141Right-handed alpha
Helix 9
9
A
145 149Right-handed 310
Helix 10
10
A
153 165Right-handed alpha
Helix 11
11
A
184 198Right-handed alpha
Helix 12
12
A
219 224Right-handed alpha
Helix 13
13
A
275 279Right-handed 310
Helix 14
14
A
288 296Right-handed alpha
Helix 15
15
A
298 305Right-handed alpha
Helix 16
16
A
327 338Right-handed alpha
Helix 17
17
A
339 341Right-handed 310
Helix 18
18
A
345 354Right-handed alpha
Helix 19
19
A
356 361Right-handed alpha
Helix 20
20
A
380 390Right-handed alpha
Helix 21
21
A
394 404Right-handed alpha
Helix 22
22
A
419 427Right-handed alpha
Helix 23
23
A
433 438Right-handed alpha
Helix 24
24
A
438 448Right-handed alpha
Helix 25
25
A
476 498Right-handed alpha
Helix 26
26
A
498 508Right-handed alpha
Helix 27
27
A
521 530Right-handed alpha
Helix 28
28
A
536 546Right-handed alpha
Helix 29
29
A
551 563Right-handed alpha
Helix 30
30
A
597 602Right-handed alpha
Helix 31
31
A
606 615Right-handed alpha
Helix 32
32
A
658 675Right-handed alpha
Helix 33
33
A
697 709Right-handed alpha
Helix 34
34
A
709 720Right-handed alpha
Helix 35
35
A
727 732Right-handed alpha
Helix 36
36
A
735 739Right-handed 310
Helix 37
37
A
748 759Right-handed alpha
Helix 38
38
A
780 791Right-handed alpha
Helix 39
39
A
796 812Right-handed alpha
Helix 40
40
A
812 834Right-handed alpha
Helix 41
41
A
854 876Right-handed alpha
Helix 42
42
A
877 969Right-handed alpha
Helix 43
43
B
9 14Right-handed alpha
Helix 44
44
B
22 28Right-handed alpha
Helix 45
45
B
29 31Right-handed 310
Helix 46
46
B
80 84Right-handed 310
Helix 47
47
B
96 110Right-handed alpha
Helix 48
48
B
134 140Right-handed alpha
Helix 49
49
B
152 168Right-handed alpha
Helix 50
50
B
182 198Right-handed alpha
Helix 51
51
B
218 232Right-handed alpha
Helix 52
52
B
274 278Right-handed 310
Helix 53
53
B
288 296Right-handed alpha
Helix 54
54
B
298 305Right-handed alpha
Helix 55
55
B
327 343Right-handed alpha
Helix 56
56
B
347 362Right-handed alpha
Helix 57
57
B
363 365Right-handed 310
Helix 58
58
B
381 392Right-handed alpha
Helix 59
59
B
394 404Right-handed alpha
Helix 60
60
B
419 451Right-handed alpha
Helix 61
61
B
476 496Right-handed alpha
Helix 62
62
B
498 509Right-handed alpha
Helix 63
63
B
521 530Right-handed alpha
Helix 64
64
B
536 545Right-handed alpha
Helix 65
65
B
551 563Right-handed alpha
Helix 66
66
B
596 603Right-handed alpha
Helix 67
67
B
606 615Right-handed alpha
Helix 68
68
B
618 626Right-handed alpha
Helix 69
69
B
658 672Right-handed alpha
Helix 70
70
B
673 676Right-handed 310
Helix 71
71
B
697 708Right-handed alpha
Helix 72
72
B
709 718Right-handed alpha
Helix 73
73
B
726 735Right-handed alpha
Helix 74
74
B
736 739Right-handed 310
Helix 75
75
B
748 759Right-handed alpha
Helix 76
76
B
779 792Right-handed alpha
Helix 77
77
B
793 812Right-handed alpha
Helix 78
78
B
818 831Right-handed alpha
Helix 79
79
B
832 835Right-handed 310
Helix 80
80
B
856 973Right-handed alpha
Helix 81
81
C
4 18Right-handed alpha
Helix 82
82
C
30 39Right-handed alpha
Helix 83
83
C
43 52Right-handed alpha
Helix 84
84
C
55 62Right-handed alpha
Helix 85
85
C
65 78Right-handed alpha
Helix 86
86
C
84 94Right-handed alpha
Helix 87
87
C
105 112Right-handed alpha
Helix 88
88
C
120 129Right-handed alpha
Helix 89
89
C
140 149Right-handed alpha
Helix 90
90
D
4 17Right-handed alpha
Helix 91
91
D
29 38Right-handed alpha
Helix 92
92
D
43 52Right-handed alpha
Helix 93
93
D
55 62Right-handed alpha
Helix 94
94
D
65 78Right-handed alpha
Helix 95
95
D
84 94Right-handed alpha
Helix 96
96
D
105 115Right-handed alpha
Helix 97
97
D
120 129Right-handed alpha
Helix 98
98
D
139 149Right-handed alpha
Helix 99
99
E
3 9Right-handed alpha
Helix 100
100
E
11 16Right-handed alpha
Helix 101
101
E
17 22Right-handed alpha
Helix 102
102
E
35 40Right-handed 310
Helix 103
103
E
55 67Right-handed alpha
Helix 104
104
E
75 85Right-handed alpha
Helix 105
105
E
91 100Right-handed alpha
Helix 106
106
E
107 118Right-handed alpha
Helix 107
107
E
124 134Right-handed alpha
Helix 108
108
E
143 154Right-handed alpha
Helix 109
109
E
159 169Right-handed alpha
Helix 110
110
E
178 188Right-handed alpha
Helix 111
111
F
4 12Right-handed alpha
Helix 112
112
F
33 35Right-handed 310
Helix 113
113
F
36 41Right-handed alpha
Helix 114
114
F
56 58Right-handed 310
Helix 115
115
F
59 64Right-handed alpha
Helix 116
116
F
75 79Right-handed 310
Helix 117
117
F
81 86Right-handed 310
Helix 118
118
F
94 99Right-handed alpha
Helix 119
119
F
100 102Right-handed 310
Helix 120
120
F
107 119Right-handed alpha
Helix 121
121
F
127 134Right-handed alpha
Helix 122
122
F
144 154Right-handed alpha
Helix 123
123
F
159 169Right-handed alpha
Helix 124
124
F
178 185Right-handed alpha
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There are 19 sheets in PDB entry 3DTP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
43 53anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
76 77anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
120 124anti-parallel
Strand 3
A
678 685parallel
Strand 4
A
171 176parallel
Strand 5
A
461 465parallel
Strand 6
A
250 256anti-parallel
Strand 7
A
262 265anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
120 124anti-parallel
Strand 3
A
678 685parallel
Strand 4
A
171 176parallel
Strand 5
A
461 465parallel
Strand 6
A
250 256anti-parallel
Strand 7
A
268 269anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 571first strand
Strand 2
A
580 585anti-parallel
Strand 3
A
588 593anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
767 769first strand
Strand 2
A
774 776anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
44 53anti-parallel
Strand 4
B
34 38anti-parallel
Strand 5
B
76 77anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
121 122anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
248 256anti-parallel
Strand 3
B
268 272anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
248 256anti-parallel
Strand 3
B
459 464anti-parallel
Strand 4
B
171 175parallel
Strand 5
B
678 682parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
245 246anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 407first strand
Strand 2
B
414 415anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 571first strand
Strand 2
B
580 583anti-parallel
Strand 3
B
590 593anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
723 725first strand
Strand 2
B
774 776anti-parallel
Strand 3
B
767 769anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
C
63 64anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
137 139anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 27first strand
Strand 2
D
63 64anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
137 138anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
172 173first strand
Strand 2
E
176 177anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
142 143first strand
Strand 2
F
176 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il