Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 3DVK entry
There are 2 chains in PDB entry 3DVK
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
LEU 4 | ALA 147 |
B
|
GLY 1815 | LYS 1837 |
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There are 9
helices in PDB entry 3DVK. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 5 |
20 | Right-handed alpha |
Helix 2 |
2 | A
| 28 |
40 | Right-handed alpha |
Helix 3 |
3 | A
| 44 |
56 | Right-handed alpha |
Helix 4 |
4 | A
| 64 |
74 | Right-handed alpha |
Helix 5 |
5 | A
| 80 |
93 | Right-handed alpha |
Helix 6 |
6 | A
| 101 |
112 | Right-handed alpha |
Helix 7 |
7 | A
| 117 |
129 | Right-handed alpha |
Helix 8 |
8 | A
| 137 |
146 | Right-handed alpha |
Helix 9 |
9 | B
| 1817 |
1836 | Right-handed alpha |
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There are no sheets in PDB entry
3DVK
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il