Analysis of interatomic Contacts of Structural Units in PDB entry:
3DXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DXF entry

There are 2 chains in PDB entry 3DXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4PHE 296
B
 LYS 4PHE 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 3DXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
86 104Right-handed alpha
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
127 143Right-handed alpha
Helix 7
7
A
157 161Right-handed 310
Helix 8
8
A
189 191Right-handed 310
Helix 9
9
A
192 203Right-handed alpha
Helix 10
10
A
203 208Right-handed alpha
Helix 11
11
A
220 233Right-handed alpha
Helix 12
12
A
242 250Right-handed alpha
Helix 13
13
A
253 265Right-handed alpha
Helix 14
14
A
271 279Right-handed alpha
Helix 15
15
A
284 292Right-handed alpha
Helix 16
16
B
14 28Right-handed alpha
Helix 17
17
B
42 50Right-handed alpha
Helix 18
18
B
61 70Right-handed alpha
Helix 19
19
B
86 104Right-handed alpha
Helix 20
20
B
116 121Right-handed alpha
Helix 21
21
B
127 143Right-handed alpha
Helix 22
22
B
157 161Right-handed 310
Helix 23
23
B
189 191Right-handed 310
Helix 24
24
B
192 203Right-handed alpha
Helix 25
25
B
203 208Right-handed alpha
Helix 26
26
B
220 233Right-handed alpha
Helix 27
27
B
242 247Right-handed alpha
Helix 28
28
B
255 266Right-handed alpha
Helix 29
29
B
271 279Right-handed alpha
Helix 30
30
B
284 293Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3DXF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
30 36parallel
Strand 3
A
5 9parallel
Strand 4
A
74 77parallel
Strand 5
A
108 111parallel
Strand 6
A
147 151parallel
Strand 7
A
211 213parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
185 188parallel
Strand 3
A
217 219anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
236 238parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
31 36parallel
Strand 3
B
6 9parallel
Strand 4
B
72 77parallel
Strand 5
B
108 113parallel
Strand 6
B
147 151parallel
Strand 7
B
211 213parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
185 188parallel
Strand 3
B
217 219anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
174 176anti-parallel
Strand 3
B
236 238parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il