Analysis of interatomic Contacts of Structural Units in PDB entry:
3DYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DYQ entry

There are 2 chains in PDB entry 3DYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 178LYS 505
B
GLY 178LYS 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3DYQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
189 196Right-handed alpha
Helix 2
2
A
207 222Right-handed alpha
Helix 3
3
A
223 228Right-handed alpha
Helix 4
4
A
231 246Right-handed alpha
Helix 5
5
A
253 271Right-handed alpha
Helix 6
6
A
272 276Right-handed 310
Helix 7
7
A
278 292Right-handed alpha
Helix 8
8
A
300 308Right-handed alpha
Helix 9
9
A
309 315Right-handed alpha
Helix 10
10
A
319 335Right-handed alpha
Helix 11
11
A
336 339Right-handed 310
Helix 12
12
A
345 363Right-handed alpha
Helix 13
13
A
364 366Right-handed 310
Helix 14
14
A
367 380Right-handed alpha
Helix 15
15
A
386 403Right-handed alpha
Helix 16
16
A
404 408Right-handed 310
Helix 17
17
A
409 435Right-handed alpha
Helix 18
18
A
439 443Right-handed 310
Helix 19
19
A
448 460Right-handed alpha
Helix 20
20
A
460 472Right-handed alpha
Helix 21
21
A
473 501Right-handed alpha
Helix 22
22
B
189 196Right-handed alpha
Helix 23
23
B
207 222Right-handed alpha
Helix 24
24
B
223 229Right-handed alpha
Helix 25
25
B
231 246Right-handed alpha
Helix 26
26
B
253 271Right-handed alpha
Helix 27
27
B
272 277Right-handed alpha
Helix 28
28
B
278 292Right-handed alpha
Helix 29
29
B
300 307Right-handed alpha
Helix 30
30
B
309 315Right-handed alpha
Helix 31
31
B
319 335Right-handed alpha
Helix 32
32
B
336 339Right-handed 310
Helix 33
33
B
345 363Right-handed alpha
Helix 34
34
B
364 366Right-handed 310
Helix 35
35
B
367 380Right-handed alpha
Helix 36
36
B
386 403Right-handed alpha
Helix 37
37
B
404 408Right-handed 310
Helix 38
38
B
409 435Right-handed alpha
Helix 39
39
B
439 443Right-handed 310
Helix 40
40
B
448 460Right-handed alpha
Helix 41
41
B
460 472Right-handed alpha
Helix 42
42
B
473 505Right-handed alpha
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There are no sheets in PDB entry 3DYQ

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