Analysis of interatomic Contacts of Structural Units in PDB entry:
3E3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E3J entry

There are 8 chains in PDB entry 3E3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
LYS 8ALA 883
T
G 1 A 32
N
T 101 C 132
B
LYS 8ALA 883
X
G 1 A 32
Y
T 101 C 132
R
G 1 A 8
Z
G 1 A 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3E3J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
C
12 28Right-handed alpha
Helix 2
2
C
31 52Right-handed alpha
Helix 3
3
C
73 95Right-handed alpha
Helix 4
4
C
100 106Right-handed alpha
Helix 5
5
C
110 128Right-handed alpha
Helix 6
6
C
133 149Right-handed alpha
Helix 7
7
C
153 163Right-handed alpha
Helix 8
8
C
206 221Right-handed alpha
Helix 9
9
C
247 252Right-handed alpha
Helix 10
10
C
301 307Right-handed alpha
Helix 11
11
C
313 325Right-handed alpha
Helix 12
12
C
331 342Right-handed alpha
Helix 13
13
C
377 408Right-handed alpha
Helix 14
14
C
437 443Right-handed alpha
Helix 15
15
C
454 468Right-handed alpha
Helix 16
16
C
474 485Right-handed alpha
Helix 17
17
C
490 495Right-handed alpha
Helix 18
18
C
501 505Right-handed 310
Helix 19
19
C
507 525Right-handed alpha
Helix 20
20
C
542 550Right-handed alpha
Helix 21
21
C
569 588Right-handed alpha
Helix 22
22
C
612 622Right-handed alpha
Helix 23
23
C
626 638Right-handed alpha
Helix 24
24
C
642 654Right-handed alpha
Helix 25
25
C
654 661Right-handed alpha
Helix 26
26
C
669 687Right-handed alpha
Helix 27
27
C
691 707Right-handed alpha
Helix 28
28
C
752 754Right-handed 310
Helix 29
29
C
781 801Right-handed alpha
Helix 30
30
C
817 836Right-handed alpha
Helix 31
31
C
841 849Right-handed alpha
Helix 32
32
C
857 861Right-handed 310
Helix 33
33
C
873 878Right-handed alpha
Helix 34
34
B
13 28Right-handed alpha
Helix 35
35
B
31 41Right-handed alpha
Helix 36
36
B
44 52Right-handed alpha
Helix 37
37
B
73 95Right-handed alpha
Helix 38
38
B
100 106Right-handed alpha
Helix 39
39
B
110 128Right-handed alpha
Helix 40
40
B
133 145Right-handed alpha
Helix 41
41
B
151 163Right-handed alpha
Helix 42
42
B
187 191Right-handed 310
Helix 43
43
B
205 221Right-handed alpha
Helix 44
44
B
247 252Right-handed alpha
Helix 45
45
B
301 307Right-handed alpha
Helix 46
46
B
313 325Right-handed alpha
Helix 47
47
B
331 342Right-handed alpha
Helix 48
48
B
377 408Right-handed alpha
Helix 49
49
B
437 443Right-handed alpha
Helix 50
50
B
454 468Right-handed alpha
Helix 51
51
B
474 485Right-handed alpha
Helix 52
52
B
490 495Right-handed alpha
Helix 53
53
B
501 505Right-handed 310
Helix 54
54
B
507 525Right-handed alpha
Helix 55
55
B
542 550Right-handed alpha
Helix 56
56
B
569 588Right-handed alpha
Helix 57
57
B
612 622Right-handed alpha
Helix 58
58
B
626 638Right-handed alpha
Helix 59
59
B
642 654Right-handed alpha
Helix 60
60
B
654 661Right-handed alpha
Helix 61
61
B
669 687Right-handed alpha
Helix 62
62
B
689 707Right-handed alpha
Helix 63
63
B
752 754Right-handed 310
Helix 64
64
B
770 802Right-handed alpha
Helix 65
65
B
817 836Right-handed alpha
Helix 66
66
B
840 849Right-handed alpha
Helix 67
67
B
857 861Right-handed 310
Helix 68
68
B
871 876Right-handed 310
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There are 16 sheets in PDB entry 3E3J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
227 232first strand
Strand 2
C
241 246anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
297 298first strand
Strand 2
C
418 421parallel
Strand 3
C
426 428anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
328 330first strand
Strand 2
C
444 446anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
536 537first strand
Strand 2
C
813 815anti-parallel
Strand 3
C
808 809anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
593 594first strand
Strand 2
C
609 610anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
725 728first strand
Strand 2
C
734 737anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
744 746first strand
Strand 2
C
760 762anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
749 751first strand
Strand 2
C
755 757anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
227 232first strand
Strand 2
B
241 246anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
297 298first strand
Strand 2
B
418 421parallel
Strand 3
B
426 428anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
414 415first strand
Strand 2
B
327 330anti-parallel
Strand 3
B
444 446anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
536 537first strand
Strand 2
B
813 815anti-parallel
Strand 3
B
808 809anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
593 594first strand
Strand 2
B
609 610anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
725 728first strand
Strand 2
B
734 737anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
744 746first strand
Strand 2
B
760 762anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
749 751first strand
Strand 2
B
755 757anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il