Analysis of interatomic Contacts of Structural Units in PDB entry:
3E5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E5A entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 3E5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 125THR 287
A
 LEU 289LYS 389
B
 SER 6GLU 42
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3E5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 131Right-handed 310
Helix 2
2
A
141 145Right-handed 310
Helix 3
3
A
166 173Right-handed alpha
Helix 4
4
A
174 187Right-handed alpha
Helix 5
5
A
217 226Right-handed alpha
Helix 6
6
A
229 249Right-handed alpha
Helix 7
7
A
258 260Right-handed 310
Helix 8
8
A
292 296Right-handed 310
Helix 9
9
A
297 302Right-handed alpha
Helix 10
10
A
309 325Right-handed alpha
Helix 11
11
A
333 343Right-handed alpha
Helix 12
12
A
353 364Right-handed alpha
Helix 13
13
A
367 371Right-handed 310
Helix 14
14
A
373 380Right-handed alpha
Helix 15
15
A
380 387Right-handed alpha
Helix 16
16
B
28 32Right-handed 310
Helix 17
17
B
33 41Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3E5A. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 138first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
196 201anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
279 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il