Analysis of interatomic Contacts of Structural Units in PDB entry:
3E5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E5M entry

There are 2 chains in PDB entry 3E5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LEU 298
B
 LYS 4LEU 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3E5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
43 50Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
86 104Right-handed alpha
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
127 138Right-handed alpha
Helix 7
7
A
139 144Right-handed alpha
Helix 8
8
A
157 161Right-handed 310
Helix 9
9
A
189 191Right-handed 310
Helix 10
10
A
192 202Right-handed alpha
Helix 11
11
A
203 208Right-handed alpha
Helix 12
12
A
220 231Right-handed alpha
Helix 13
13
A
242 249Right-handed alpha
Helix 14
14
A
254 266Right-handed alpha
Helix 15
15
A
271 279Right-handed alpha
Helix 16
16
A
284 293Right-handed alpha
Helix 17
17
B
14 28Right-handed alpha
Helix 18
18
B
41 50Right-handed alpha
Helix 19
19
B
62 70Right-handed alpha
Helix 20
20
B
88 104Right-handed alpha
Helix 21
21
B
116 121Right-handed alpha
Helix 22
22
B
127 144Right-handed alpha
Helix 23
23
B
157 160Right-handed 310
Helix 24
24
B
189 191Right-handed 310
Helix 25
25
B
192 203Right-handed alpha
Helix 26
26
B
203 208Right-handed alpha
Helix 27
27
B
220 233Right-handed alpha
Helix 28
28
B
242 248Right-handed alpha
Helix 29
29
B
253 265Right-handed alpha
Helix 30
30
B
271 279Right-handed alpha
Helix 31
31
B
284 292Right-handed alpha
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There are 6 sheets in PDB entry 3E5M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
32 36parallel
Strand 3
A
7 9parallel
Strand 4
A
74 77parallel
Strand 5
A
108 112parallel
Strand 6
A
147 151parallel
Strand 7
A
211 213parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
185 188parallel
Strand 3
A
218 219anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
236 238parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
30 35parallel
Strand 3
B
5 10parallel
Strand 4
B
74 77parallel
Strand 5
B
108 112parallel
Strand 6
B
147 151parallel
Strand 7
B
211 213parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
185 188parallel
Strand 3
B
217 219anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
174 176anti-parallel
Strand 3
B
236 238parallel
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