Analysis of interatomic Contacts of Structural Units in PDB entry:
3E61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E61 entry

There are 2 chains in PDB entry 3E61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 61HIS 328
B
 LEU 61ARG 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3E61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 88Right-handed alpha
Helix 2
2
A
100 114Right-handed alpha
Helix 3
3
A
122 124Right-handed 310
Helix 4
4
A
125 136Right-handed alpha
Helix 5
5
A
144 146Right-handed 310
Helix 6
6
A
156 171Right-handed alpha
Helix 7
7
A
185 201Right-handed alpha
Helix 8
8
A
212 215Right-handed 310
Helix 9
9
A
216 228Right-handed alpha
Helix 10
10
A
236 250Right-handed alpha
Helix 11
11
A
266 271Right-handed 310
Helix 12
12
A
282 295Right-handed alpha
Helix 13
13
B
71 88Right-handed alpha
Helix 14
14
B
100 114Right-handed alpha
Helix 15
15
B
122 124Right-handed 310
Helix 16
16
B
125 136Right-handed alpha
Helix 17
17
B
156 171Right-handed alpha
Helix 18
18
B
185 202Right-handed alpha
Helix 19
19
B
212 215Right-handed 310
Helix 20
20
B
216 227Right-handed alpha
Helix 21
21
B
236 250Right-handed alpha
Helix 22
22
B
266 271Right-handed 310
Helix 23
23
B
282 296Right-handed alpha
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There are 6 sheets in PDB entry 3E61. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
62 66parallel
Strand 3
A
118 121parallel
Strand 4
A
140 142parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
176 180parallel
Strand 3
A
231 234parallel
Strand 4
A
259 261parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
312 314anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
62 66parallel
Strand 3
B
118 121parallel
Strand 4
B
140 142parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 210first strand
Strand 2
B
175 180parallel
Strand 3
B
231 234parallel
Strand 4
B
259 261parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 280first strand
Strand 2
B
312 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il