Analysis of interatomic Contacts of Structural Units in PDB entry:
3E8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E8N entry

There is 1 chain in PDB entry 3E8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 61ASN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3E8N. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
64 66Right-handed 310
Helix 2
2
A
104 116Right-handed alpha
Helix 3
3
A
117 121Right-handed 310
Helix 4
4
A
150 159Right-handed alpha
Helix 5
5
A
162 185Right-handed alpha
Helix 6
6
A
192 194Right-handed 310
Helix 7
7
A
212 219Right-handed alpha
Helix 8
8
A
231 237Right-handed alpha
Helix 9
9
A
242 259Right-handed alpha
Helix 10
10
A
267 275Right-handed alpha
Helix 11
11
A
309 320Right-handed alpha
Helix 12
12
A
331 342Right-handed alpha
Helix 13
13
A
351 357Right-handed alpha
Helix 14
14
A
358 367Right-handed alpha
Helix 15
15
A
370 379Right-handed alpha
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There are 2 sheets in PDB entry 3E8N. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 76first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
129 134anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 198first strand
Strand 2
A
204 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il