Analysis of interatomic Contacts of Structural Units in PDB entry:
3EB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EB4 entry

There is 1 chain in PDB entry 3EB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 35SER 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3EB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 79Right-handed alpha
Helix 2
2
A
89 92Right-handed 310
Helix 3
3
A
93 107Right-handed alpha
Helix 4
4
A
109 113Right-handed 310
Helix 5
5
A
125 129Right-handed 310
Helix 6
6
A
132 148Right-handed alpha
Helix 7
7
A
165 179Right-handed alpha
Helix 8
8
A
191 205Right-handed alpha
Helix 9
9
A
222 237Right-handed alpha
Helix 10
10
A
246 253Right-handed 310
Helix 11
11
A
263 267Right-handed 310
Helix 12
12
A
270 279Right-handed alpha
Helix 13
13
A
279 300Right-handed alpha
Helix 14
14
A
302 312Right-handed alpha
Helix 15
15
A
326 335Right-handed alpha
Helix 16
16
A
335 340Right-handed alpha
Helix 17
17
A
341 343Right-handed 310
Helix 18
18
A
344 356Right-handed alpha
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There are 2 sheets in PDB entry 3EB4. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
48 50anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
83 85parallel
Strand 3
A
114 119parallel
Strand 4
A
152 157parallel
Strand 5
A
182 188parallel
Strand 6
A
212 216parallel
Strand 7
A
239 243parallel
Strand 8
A
319 322parallel
Strand 9
A
52 55parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il