Analysis of interatomic Contacts of Structural Units in PDB entry:
3EE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EE6 entry

There are 2 chains in PDB entry 3EE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20ARG 564
B
 SER 20ARG 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3EE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 70Right-handed alpha
Helix 2
2
A
81 90Right-handed alpha
Helix 3
3
A
92 107Right-handed alpha
Helix 4
4
A
126 133Right-handed alpha
Helix 5
5
A
160 164Right-handed 310
Helix 6
6
A
201 209Right-handed alpha
Helix 7
7
A
236 248Right-handed alpha
Helix 8
8
A
270 284Right-handed alpha
Helix 9
9
A
302 312Right-handed alpha
Helix 10
10
A
330 332Right-handed 310
Helix 11
11
A
333 350Right-handed alpha
Helix 12
12
A
419 421Right-handed 310
Helix 13
13
A
422 433Right-handed alpha
Helix 14
14
A
438 442Right-handed 310
Helix 15
15
A
473 494Right-handed alpha
Helix 16
16
A
503 510Right-handed alpha
Helix 17
17
A
552 562Right-handed alpha
Helix 18
18
B
57 70Right-handed alpha
Helix 19
19
B
81 90Right-handed alpha
Helix 20
20
B
92 103Right-handed alpha
Helix 21
21
B
104 108Right-handed 310
Helix 22
22
B
126 133Right-handed alpha
Helix 23
23
B
160 164Right-handed 310
Helix 24
24
B
201 209Right-handed alpha
Helix 25
25
B
236 248Right-handed alpha
Helix 26
26
B
270 284Right-handed alpha
Helix 27
27
B
302 312Right-handed alpha
Helix 28
28
B
330 332Right-handed 310
Helix 29
29
B
333 350Right-handed alpha
Helix 30
30
B
419 421Right-handed 310
Helix 31
31
B
422 433Right-handed alpha
Helix 32
32
B
473 495Right-handed alpha
Helix 33
33
B
503 510Right-handed alpha
Helix 34
34
B
552 562Right-handed alpha
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There are 20 sheets in PDB entry 3EE6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
149 152anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
46 53anti-parallel
Strand 4
A
167 171anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
288 293parallel
Strand 3
A
224 229parallel
Strand 4
A
320 323parallel
Strand 5
A
353 357parallel
Strand 6
A
386 393parallel
Strand 7
A
402 404anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
288 293parallel
Strand 3
A
224 229parallel
Strand 4
A
320 323parallel
Strand 5
A
353 357parallel
Strand 6
A
386 393parallel
Strand 7
A
452 455parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
377 378anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
372 373anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 417first strand
Strand 2
A
446 449anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 463first strand
Strand 2
A
466 471anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 516first strand
Strand 2
A
550 551anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 524first strand
Strand 2
A
534 537anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
139 143anti-parallel
Strand 3
B
148 152anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
119 125anti-parallel
Strand 3
B
46 53anti-parallel
Strand 4
B
167 171anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
288 293parallel
Strand 3
B
224 229parallel
Strand 4
B
320 323parallel
Strand 5
B
353 357parallel
Strand 6
B
386 393parallel
Strand 7
B
402 404anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
288 293parallel
Strand 3
B
224 229parallel
Strand 4
B
320 323parallel
Strand 5
B
353 357parallel
Strand 6
B
386 393parallel
Strand 7
B
452 455parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 328first strand
Strand 2
B
377 378anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 368first strand
Strand 2
B
371 373anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 417first strand
Strand 2
B
446 449anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 463first strand
Strand 2
B
466 471anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
515 516first strand
Strand 2
B
550 551anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
522 527first strand
Strand 2
B
532 537anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il