Analysis of interatomic Contacts of Structural Units in PDB entry:
3F71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F71 entry

There are 2 chains in PDB entry 3F71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 2ILE 105
A
ALA 107LYS 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3F71. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
58 64Right-handed alpha
Helix 3
3
A
75 85Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
108 115Right-handed alpha
Helix 6
6
A
126 128Right-handed 310
Helix 7
7
A
129 134Right-handed alpha
Helix 8
8
A
157 159Right-handed 310
Helix 9
9
A
160 174Right-handed alpha
Helix 10
10
A
174 183Right-handed alpha
Helix 11
11
A
184 186Right-handed 310
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There are 3 sheets in PDB entry 3F71. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 57first strand
Strand 2
A
32 37parallel
Strand 3
A
5 10parallel
Strand 4
A
69 72parallel
Strand 5
A
101 105parallel
Strand 6
A
152 155parallel
Strand 7
A
146 149anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 45first strand
Strand 2
A
51 52anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 123first strand
Strand 2
A
140 141parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il