Analysis of interatomic Contacts of Structural Units in PDB entry:
3FAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FAA entry

There are 5 chains in PDB entry 3FAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 171GLY 500
B
 ILE 171ILE 501
C
 ILE 171GLY 500
D
 ILE 171GLY 500
E
 ILE 171GLY 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 3FAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
176 186Right-handed alpha
Helix 2
2
A
194 203Right-handed alpha
Helix 3
3
A
238 249Right-handed alpha
Helix 4
4
A
270 273Right-handed 310
Helix 5
5
A
287 295Right-handed alpha
Helix 6
6
A
298 318Right-handed alpha
Helix 7
7
A
351 355Right-handed 310
Helix 8
8
A
380 385Right-handed alpha
Helix 9
9
A
393 413Right-handed alpha
Helix 10
10
A
437 446Right-handed alpha
Helix 11
11
A
455 459Right-handed 310
Helix 12
12
A
461 475Right-handed alpha
Helix 13
13
A
484 499Right-handed alpha
Helix 14
14
B
176 187Right-handed alpha
Helix 15
15
B
194 204Right-handed alpha
Helix 16
16
B
238 250Right-handed alpha
Helix 17
17
B
270 274Right-handed 310
Helix 18
18
B
287 295Right-handed alpha
Helix 19
19
B
298 318Right-handed alpha
Helix 20
20
B
335 337Right-handed 310
Helix 21
21
B
351 355Right-handed 310
Helix 22
22
B
375 379Right-handed 310
Helix 23
23
B
380 385Right-handed alpha
Helix 24
24
B
392 413Right-handed alpha
Helix 25
25
B
437 446Right-handed alpha
Helix 26
26
B
456 460Right-handed 310
Helix 27
27
B
461 476Right-handed alpha
Helix 28
28
B
478 482Right-handed 310
Helix 29
29
B
484 499Right-handed alpha
Helix 30
30
C
176 185Right-handed alpha
Helix 31
31
C
194 203Right-handed alpha
Helix 32
32
C
235 237Right-handed 310
Helix 33
33
C
238 249Right-handed alpha
Helix 34
34
C
288 292Right-handed alpha
Helix 35
35
C
300 318Right-handed alpha
Helix 36
36
C
375 379Right-handed 310
Helix 37
37
C
380 385Right-handed alpha
Helix 38
38
C
393 413Right-handed alpha
Helix 39
39
C
438 447Right-handed alpha
Helix 40
40
C
456 460Right-handed 310
Helix 41
41
C
461 473Right-handed alpha
Helix 42
42
C
478 482Right-handed 310
Helix 43
43
C
484 492Right-handed alpha
Helix 44
44
C
493 497Right-handed 310
Helix 45
45
D
176 186Right-handed alpha
Helix 46
46
D
194 205Right-handed alpha
Helix 47
47
D
238 250Right-handed alpha
Helix 48
48
D
270 274Right-handed 310
Helix 49
49
D
287 294Right-handed alpha
Helix 50
50
D
298 318Right-handed alpha
Helix 51
51
D
335 337Right-handed 310
Helix 52
52
D
375 379Right-handed 310
Helix 53
53
D
380 385Right-handed alpha
Helix 54
54
D
393 413Right-handed alpha
Helix 55
55
D
437 445Right-handed alpha
Helix 56
56
D
461 476Right-handed alpha
Helix 57
57
D
478 482Right-handed 310
Helix 58
58
D
484 497Right-handed alpha
Helix 59
59
E
176 187Right-handed alpha
Helix 60
60
E
194 205Right-handed alpha
Helix 61
61
E
238 249Right-handed alpha
Helix 62
62
E
270 274Right-handed 310
Helix 63
63
E
287 295Right-handed alpha
Helix 64
64
E
298 318Right-handed alpha
Helix 65
65
E
335 337Right-handed 310
Helix 66
66
E
380 385Right-handed alpha
Helix 67
67
E
393 414Right-handed alpha
Helix 68
68
E
437 447Right-handed alpha
Helix 69
69
E
461 473Right-handed alpha
Helix 70
70
E
484 498Right-handed alpha
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There are 16 sheets in PDB entry 3FAA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 213first strand
Strand 2
A
217 224anti-parallel
Strand 3
A
227 235anti-parallel
Strand 4
A
275 280anti-parallel
Strand 5
A
264 267anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
356 359anti-parallel
Strand 3
A
364 365anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
347 349anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 213first strand
Strand 2
B
217 224anti-parallel
Strand 3
B
227 234anti-parallel
Strand 4
B
276 280anti-parallel
Strand 5
B
262 267anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
356 359anti-parallel
Strand 3
B
364 365anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
347 349anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 213first strand
Strand 2
C
218 224anti-parallel
Strand 3
C
227 234anti-parallel
Strand 4
C
276 281anti-parallel
Strand 5
C
262 267anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 287first strand
Strand 2
C
339 341anti-parallel
Strand 3
C
347 349anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 330first strand
Strand 2
C
356 359anti-parallel
Strand 3
C
364 365anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
206 213first strand
Strand 2
D
217 224anti-parallel
Strand 3
D
227 234anti-parallel
Strand 4
D
276 281anti-parallel
Strand 5
D
262 266anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
328 330first strand
Strand 2
D
356 359anti-parallel
Strand 3
D
364 365anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
339 341first strand
Strand 2
D
347 349anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
206 207first strand
Strand 2
E
217 224anti-parallel
Strand 3
E
212 213anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
206 207first strand
Strand 2
E
217 224anti-parallel
Strand 3
E
227 234anti-parallel
Strand 4
E
276 280anti-parallel
Strand 5
E
262 266anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
328 330first strand
Strand 2
E
356 359anti-parallel
Strand 3
E
364 366anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
339 341first strand
Strand 2
E
347 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il