Analysis of interatomic Contacts of Structural Units in PDB entry:
3FD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FD5 entry

There are 2 chains in PDB entry 3FD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 9PRO 377
B
SER 6PRO 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3FD5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
19 24Right-handed 310
Helix 3
3
A
34 43Right-handed alpha
Helix 4
4
A
95 114Right-handed alpha
Helix 5
5
A
133 155Right-handed alpha
Helix 6
6
A
181 185Right-handed 310
Helix 7
7
A
204 214Right-handed alpha
Helix 8
8
A
229 246Right-handed alpha
Helix 9
9
A
248 258Right-handed alpha
Helix 10
10
A
269 280Right-handed alpha
Helix 11
11
A
298 306Right-handed alpha
Helix 12
12
A
311 315Right-handed 310
Helix 13
13
A
329 342Right-handed alpha
Helix 14
14
B
9 13Right-handed 310
Helix 15
15
B
19 23Right-handed 310
Helix 16
16
B
34 42Right-handed alpha
Helix 17
17
B
95 113Right-handed alpha
Helix 18
18
B
133 155Right-handed alpha
Helix 19
19
B
181 185Right-handed 310
Helix 20
20
B
204 215Right-handed alpha
Helix 21
21
B
217 225Right-handed alpha
Helix 22
22
B
229 246Right-handed alpha
Helix 23
23
B
248 258Right-handed alpha
Helix 24
24
B
269 281Right-handed alpha
Helix 25
25
B
298 306Right-handed alpha
Helix 26
26
B
329 342Right-handed alpha
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There are 4 sheets in PDB entry 3FD5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
71 74first strand
Strand 2
A
81 89anti-parallel
Strand 3
A
171 180anti-parallel
Strand 4
A
121 129anti-parallel
Strand 5
A
159 167parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 265first strand
Strand 2
A
324 328anti-parallel
Strand 3
A
196 199anti-parallel
Strand 4
A
352 359anti-parallel
Strand 5
A
286 296anti-parallel
Strand 6
A
364 375parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 74first strand
Strand 2
B
81 89anti-parallel
Strand 3
B
172 180anti-parallel
Strand 4
B
121 129anti-parallel
Strand 5
B
159 167parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
262 265first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
196 199anti-parallel
Strand 4
B
352 359anti-parallel
Strand 5
B
286 296anti-parallel
Strand 6
B
364 375parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il