Analysis of interatomic Contacts of Structural Units in PDB entry:
3FII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FII entry

There are 2 chains in PDB entry 3FII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ILE 412
B
 LEU 32ASP 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3FII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 31Right-handed 310
Helix 2
2
A
55 60Right-handed 310
Helix 3
3
A
80 99Right-handed alpha
Helix 4
4
A
101 113Right-handed alpha
Helix 5
5
A
181 185Right-handed 310
Helix 6
6
A
220 237Right-handed alpha
Helix 7
7
A
264 271Right-handed alpha
Helix 8
8
A
272 278Right-handed 310
Helix 9
9
A
279 304Right-handed alpha
Helix 10
10
A
312 324Right-handed alpha
Helix 11
11
A
337 349Right-handed alpha
Helix 12
12
A
352 361Right-handed alpha
Helix 13
13
A
394 405Right-handed 310
Helix 14
14
B
49 54Right-handed alpha
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There are 5 sheets in PDB entry 3FII. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
191 194anti-parallel
Strand 3
A
153 157parallel
Strand 4
A
43 49parallel
Strand 5
A
34 40anti-parallel
Strand 6
A
19 22anti-parallel
Strand 7
A
136 140anti-parallel
Strand 8
A
146 150anti-parallel
Strand 9
B
34 35anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
179 180anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 218first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
373 376anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 251first strand
Strand 2
A
259 263anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
334 336anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il