Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FMT entry

There are 12 chains in PDB entry 3FMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 181
B
 MET 1ILE 181
C
 G 1 G 6
C
 T 8 G 15
C
 T 17 A 22
D
 T 1 C 22
E
 MET 1ILE 181
F
 MET 1ILE 181
G
 G 1 G 6
G
 T 8 G 15
G
 T 17 A 22
H
 T 1 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3FMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
24 36Right-handed alpha
Helix 3
3
A
37 39Right-handed 310
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
78 84Right-handed alpha
Helix 6
6
A
86 102Right-handed alpha
Helix 7
7
A
102 112Right-handed alpha
Helix 8
8
A
124 132Right-handed alpha
Helix 9
9
A
152 167Right-handed alpha
Helix 10
10
A
170 181Right-handed alpha
Helix 11
11
B
7 17Right-handed alpha
Helix 12
12
B
24 34Right-handed alpha
Helix 13
13
B
64 78Right-handed alpha
Helix 14
14
B
78 84Right-handed alpha
Helix 15
15
B
86 102Right-handed alpha
Helix 16
16
B
102 112Right-handed alpha
Helix 17
17
B
124 132Right-handed alpha
Helix 18
18
B
152 167Right-handed alpha
Helix 19
19
B
170 179Right-handed alpha
Helix 20
20
E
7 16Right-handed alpha
Helix 21
21
E
24 36Right-handed alpha
Helix 22
22
E
37 39Right-handed 310
Helix 23
23
E
64 78Right-handed alpha
Helix 24
24
E
78 84Right-handed alpha
Helix 25
25
E
86 102Right-handed alpha
Helix 26
26
E
102 112Right-handed alpha
Helix 27
27
E
124 132Right-handed alpha
Helix 28
28
E
152 167Right-handed alpha
Helix 29
29
E
170 181Right-handed alpha
Helix 30
30
F
7 17Right-handed alpha
Helix 31
31
F
24 34Right-handed alpha
Helix 32
32
F
64 78Right-handed alpha
Helix 33
33
F
78 84Right-handed alpha
Helix 34
34
F
86 102Right-handed alpha
Helix 35
35
F
102 112Right-handed alpha
Helix 36
36
F
124 132Right-handed alpha
Helix 37
37
F
152 167Right-handed alpha
Helix 38
38
F
170 179Right-handed alpha
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There are 6 sheets in PDB entry 3FMT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
B
2 6anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
146 148anti-parallel
Strand 3
A
137 139anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
146 148anti-parallel
Strand 3
B
137 139anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
Strand 2
F
2 6anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 122first strand
Strand 2
E
146 148anti-parallel
Strand 3
E
137 139anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
121 122first strand
Strand 2
F
146 148anti-parallel
Strand 3
F
137 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il