Analysis of interatomic Contacts of Structural Units in PDB entry:
3FVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FVS entry

There are 4 chains in PDB entry 3FVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 4GLY 246
A
THR 248LEU 422
B
GLN 4GLY 246
B
THR 248LEU 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3FVS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
16 27Right-handed alpha
Helix 3
3
A
43 56Right-handed alpha
Helix 4
4
A
57 62Right-handed 310
Helix 5
5
A
69 85Right-handed alpha
Helix 6
6
A
89 93Right-handed alpha
Helix 7
7
A
98 112Right-handed alpha
Helix 8
8
A
127 135Right-handed alpha
Helix 9
9
A
156 160Right-handed 310
Helix 10
10
A
163 169Right-handed alpha
Helix 11
11
A
192 207Right-handed alpha
Helix 12
12
A
228 232Right-handed 310
Helix 13
13
A
235 237Right-handed 310
Helix 14
14
A
245 250Right-handed alpha
Helix 15
15
A
251 255Right-handed 310
Helix 16
16
A
262 275Right-handed alpha
Helix 17
17
A
281 298Right-handed alpha
Helix 18
18
A
304 326Right-handed alpha
Helix 19
19
A
344 351Right-handed alpha
Helix 20
20
A
361 375Right-handed alpha
Helix 21
21
A
382 385Right-handed 310
Helix 22
22
A
386 391Right-handed alpha
Helix 23
23
A
404 421Right-handed alpha
Helix 24
24
B
7 11Right-handed 310
Helix 25
25
B
16 27Right-handed alpha
Helix 26
26
B
43 56Right-handed alpha
Helix 27
27
B
57 62Right-handed 310
Helix 28
28
B
69 85Right-handed alpha
Helix 29
29
B
98 112Right-handed alpha
Helix 30
30
B
127 135Right-handed alpha
Helix 31
31
B
156 160Right-handed 310
Helix 32
32
B
163 171Right-handed alpha
Helix 33
33
B
192 207Right-handed alpha
Helix 34
34
B
228 232Right-handed 310
Helix 35
35
B
235 237Right-handed 310
Helix 36
36
B
245 249Right-handed alpha
Helix 37
37
B
251 255Right-handed 310
Helix 38
38
B
262 275Right-handed alpha
Helix 39
39
B
281 298Right-handed alpha
Helix 40
40
B
304 326Right-handed alpha
Helix 41
41
B
344 351Right-handed alpha
Helix 42
42
B
361 375Right-handed alpha
Helix 43
43
B
382 385Right-handed 310
Helix 44
44
B
386 391Right-handed alpha
Helix 45
45
B
404 420Right-handed alpha
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There are 6 sheets in PDB entry 3FVS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 32first strand
Strand 2
A
376 377parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
94 97first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
239 244anti-parallel
Strand 4
A
209 213parallel
Strand 5
A
175 181parallel
Strand 6
A
117 122parallel
Strand 7
A
138 143parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
330 332first strand
Strand 2
A
339 343anti-parallel
Strand 3
A
396 400anti-parallel
Strand 4
A
379 380anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 32first strand
Strand 2
B
376 377parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
94 97first strand
Strand 2
B
257 260anti-parallel
Strand 3
B
239 244anti-parallel
Strand 4
B
209 213parallel
Strand 5
B
175 181parallel
Strand 6
B
117 122parallel
Strand 7
B
138 143parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
330 332first strand
Strand 2
B
339 343anti-parallel
Strand 3
B
396 400anti-parallel
Strand 4
B
379 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il