Analysis of interatomic Contacts of Structural Units in PDB entry:
3FY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FY2 entry

There are 2 chains in PDB entry 3FY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 607ASP 904
B
 TRP -3TRP 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3FY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
608 612Right-handed 310
Helix 2
2
A
617 619Right-handed 310
Helix 3
3
A
660 675Right-handed alpha
Helix 4
4
A
706 713Right-handed alpha
Helix 5
5
A
719 740Right-handed alpha
Helix 6
6
A
748 750Right-handed 310
Helix 7
7
A
764 768Right-handed 310
Helix 8
8
A
787 791Right-handed 310
Helix 9
9
A
792 799Right-handed alpha
Helix 10
10
A
802 819Right-handed alpha
Helix 11
11
A
829 839Right-handed alpha
Helix 12
12
A
850 861Right-handed alpha
Helix 13
13
A
864 868Right-handed 310
Helix 14
14
A
870 884Right-handed alpha
Helix 15
15
A
885 890Right-handed 310
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There are 4 sheets in PDB entry 3FY2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 629first strand
Strand 2
A
634 641anti-parallel
Strand 3
A
647 654anti-parallel
Strand 4
A
696 700anti-parallel
Strand 5
A
685 689anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 743first strand
Strand 2
A
769 770anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 754first strand
Strand 2
A
760 762anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 842first strand
Strand 2
A
902 903anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il