Analysis of interatomic Contacts of Structural Units in PDB entry:
3G0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G0F entry

There are 2 chains in PDB entry 3G0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 566GLU 930
B
 ASN 564GLU 930
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3G0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
579 583Right-handed 310
Helix 2
2
A
585 587Right-handed 310
Helix 3
3
A
630 648Right-handed alpha
Helix 4
4
A
678 685Right-handed alpha
Helix 5
5
A
765 786Right-handed alpha
Helix 6
6
A
794 796Right-handed 310
Helix 7
7
A
802 804Right-handed 310
Helix 8
8
A
832 836Right-handed 310
Helix 9
9
A
837 842Right-handed alpha
Helix 10
10
A
847 864Right-handed alpha
Helix 11
11
A
876 885Right-handed alpha
Helix 12
12
A
896 907Right-handed alpha
Helix 13
13
A
916 925Right-handed alpha
Helix 14
14
B
579 583Right-handed 310
Helix 15
15
B
585 587Right-handed 310
Helix 16
16
B
630 648Right-handed alpha
Helix 17
17
B
678 685Right-handed alpha
Helix 18
18
B
765 786Right-handed alpha
Helix 19
19
B
794 796Right-handed 310
Helix 20
20
B
802 804Right-handed 310
Helix 21
21
B
832 836Right-handed 310
Helix 22
22
B
837 843Right-handed alpha
Helix 23
23
B
847 864Right-handed alpha
Helix 24
24
B
876 886Right-handed alpha
Helix 25
25
B
896 907Right-handed alpha
Helix 26
26
B
910 914Right-handed 310
Helix 27
27
B
916 927Right-handed alpha
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There are 8 sheets in PDB entry 3G0F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 570first strand
Strand 2
B
788 790anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 597first strand
Strand 2
A
601 609anti-parallel
Strand 3
A
617 625anti-parallel
Strand 4
A
667 671anti-parallel
Strand 5
A
656 660anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 677first strand
Strand 2
A
798 800anti-parallel
Strand 3
A
806 808anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 790first strand
Strand 2
B
568 570anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 826first strand
Strand 2
A
829 831anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 597first strand
Strand 2
B
601 612anti-parallel
Strand 3
B
615 625anti-parallel
Strand 4
B
667 671anti-parallel
Strand 5
B
656 660anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
676 677first strand
Strand 2
B
798 800anti-parallel
Strand 3
B
806 808anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
824 826first strand
Strand 2
B
829 831anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il