Analysis of interatomic Contacts of Structural Units in PDB entry:
3G42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G42 entry

There are 4 chains in PDB entry 3G42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 221SER 474
B
MET 221SER 474
C
ASP 219SER 474
D
PRO 220ARG 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3G42. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
232 239Right-handed alpha
Helix 2
2
A
243 264Right-handed alpha
Helix 3
3
A
306 310Right-handed 310
Helix 4
4
A
313 330Right-handed alpha
Helix 5
5
A
395 411Right-handed alpha
Helix 6
6
A
426 430Right-handed 310
Helix 7
7
A
444 449Right-handed 310
Helix 8
8
A
451 470Right-handed alpha
Helix 9
9
B
232 239Right-handed alpha
Helix 10
10
B
243 264Right-handed alpha
Helix 11
11
B
313 325Right-handed alpha
Helix 12
12
B
325 330Right-handed alpha
Helix 13
13
B
343 347Right-handed 310
Helix 14
14
B
395 411Right-handed alpha
Helix 15
15
B
420 424Right-handed 310
Helix 16
16
B
426 430Right-handed 310
Helix 17
17
B
444 449Right-handed 310
Helix 18
18
B
451 470Right-handed alpha
Helix 19
19
C
232 239Right-handed alpha
Helix 20
20
C
243 264Right-handed alpha
Helix 21
21
C
313 325Right-handed alpha
Helix 22
22
C
325 330Right-handed alpha
Helix 23
23
C
343 347Right-handed 310
Helix 24
24
C
395 411Right-handed alpha
Helix 25
25
C
420 424Right-handed 310
Helix 26
26
C
426 430Right-handed 310
Helix 27
27
C
444 449Right-handed 310
Helix 28
28
C
451 470Right-handed alpha
Helix 29
29
D
232 239Right-handed alpha
Helix 30
30
D
243 264Right-handed alpha
Helix 31
31
D
313 330Right-handed alpha
Helix 32
32
D
343 347Right-handed 310
Helix 33
33
D
395 411Right-handed alpha
Helix 34
34
D
420 424Right-handed 310
Helix 35
35
D
426 430Right-handed 310
Helix 36
36
D
444 449Right-handed 310
Helix 37
37
D
451 470Right-handed alpha
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There are 12 sheets in PDB entry 3G42. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
276 284first strand
Strand 2
A
224 231parallel
Strand 3
A
334 339parallel
Strand 4
A
382 386parallel
Strand 5
A
349 351anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
369 371first strand
Strand 2
A
376 378anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
388 389first strand
Strand 2
A
392 393anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
276 284first strand
Strand 2
B
224 231parallel
Strand 3
B
334 339parallel
Strand 4
B
382 386parallel
Strand 5
B
349 351anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
368 371first strand
Strand 2
B
376 379anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
388 389first strand
Strand 2
B
392 393anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
276 284first strand
Strand 2
C
224 231parallel
Strand 3
C
334 339parallel
Strand 4
C
382 386parallel
Strand 5
C
349 351anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
369 371first strand
Strand 2
C
376 378anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
388 389first strand
Strand 2
C
392 393anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
276 284first strand
Strand 2
D
224 231parallel
Strand 3
D
334 339parallel
Strand 4
D
382 386parallel
Strand 5
D
349 351anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
369 371first strand
Strand 2
D
376 378anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
388 389first strand
Strand 2
D
392 393anti-parallel
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