Analysis of interatomic Contacts of Structural Units in PDB entry:
3GB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GB9 entry

There are 3 chains in PDB entry 3GB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 3PRO 285
B
GLY -1PRO 285
C
MET 1PRO 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3GB9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 21Right-handed alpha
Helix 2
2
A
35 42Right-handed 310
Helix 3
3
A
51 53Right-handed 310
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
97 107Right-handed alpha
Helix 7
7
A
138 142Right-handed alpha
Helix 8
8
A
167 181Right-handed alpha
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
221 231Right-handed alpha
Helix 11
11
A
249 253Right-handed 310
Helix 12
12
A
257 260Right-handed 310
Helix 13
13
A
261 279Right-handed alpha
Helix 14
14
A
280 282Right-handed 310
Helix 15
15
B
6 21Right-handed alpha
Helix 16
16
B
35 42Right-handed 310
Helix 17
17
B
51 53Right-handed 310
Helix 18
18
B
86 90Right-handed 310
Helix 19
19
B
92 97Right-handed alpha
Helix 20
20
B
97 107Right-handed alpha
Helix 21
21
B
138 142Right-handed alpha
Helix 22
22
B
167 180Right-handed alpha
Helix 23
23
B
202 212Right-handed alpha
Helix 24
24
B
221 232Right-handed alpha
Helix 25
25
B
263 279Right-handed alpha
Helix 26
26
B
280 282Right-handed 310
Helix 27
27
C
6 19Right-handed alpha
Helix 28
28
C
35 42Right-handed 310
Helix 29
29
C
51 53Right-handed 310
Helix 30
30
C
86 90Right-handed 310
Helix 31
31
C
92 97Right-handed alpha
Helix 32
32
C
97 106Right-handed alpha
Helix 33
33
C
138 142Right-handed alpha
Helix 34
34
C
167 182Right-handed alpha
Helix 35
35
C
202 212Right-handed alpha
Helix 36
36
C
221 231Right-handed alpha
Helix 37
37
C
262 279Right-handed alpha
Helix 38
38
C
280 282Right-handed 310
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There are 3 sheets in PDB entry 3GB9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
43 49first strand
Strand 2
A
67 73anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
27 31parallel
Strand 5
A
110 119parallel
Strand 6
A
234 244parallel
Strand 7
A
129 137anti-parallel
Strand 8
A
188 194parallel
Strand 9
A
216 218parallel
Strand 10
A
110 119anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
43 49first strand
Strand 2
B
67 73anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
27 31parallel
Strand 5
B
110 119parallel
Strand 6
B
234 244parallel
Strand 7
B
129 137anti-parallel
Strand 8
B
188 194parallel
Strand 9
B
216 218parallel
Strand 10
B
110 119anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 49first strand
Strand 2
C
67 73anti-parallel
Strand 3
C
76 82anti-parallel
Strand 4
C
27 30parallel
Strand 5
C
110 119parallel
Strand 6
C
234 244parallel
Strand 7
C
129 137anti-parallel
Strand 8
C
188 194parallel
Strand 9
C
216 218parallel
Strand 10
C
110 119anti-parallel
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