Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GGE entry

There are 3 chains in PDB entry 3GGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ALA 204
B
 GLY 113ALA 204
C
 SER -1ALA 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3GGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
148 153Right-handed alpha
Helix 2
2
A
174 185Right-handed alpha
Helix 3
3
B
174 185Right-handed alpha
Helix 4
4
C
148 153Right-handed alpha
Helix 5
5
C
174 185Right-handed alpha
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There are 6 sheets in PDB entry 3GGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 121first strand
Strand 2
A
190 198anti-parallel
Strand 3
A
161 165anti-parallel
Strand 4
A
168 169anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
129 132anti-parallel
Strand 3
B
202 204anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
C
129 132anti-parallel
Strand 3
C
140 144anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 122first strand
Strand 2
B
189 196anti-parallel
Strand 3
B
161 165anti-parallel
Strand 4
B
168 169anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
140 144anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 121first strand
Strand 2
C
190 198anti-parallel
Strand 3
C
161 165anti-parallel
Strand 4
C
168 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il