Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GGO entry

There are 4 chains in PDB entry 3GGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 26	ILE 310
B	LEU 28	GLU 309
C	LEU 25	ILE 305
D	SER 27	MET 308

There are 64 helices in PDB entry 3GGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	39	52	Right-handed alpha
Helix 2	2	A	64	74	Right-handed alpha
Helix 3	3	A	85	91	Right-handed 310
Helix 4	4	A	100	102	Right-handed 310
Helix 5	5	A	103	115	Right-handed alpha
Helix 6	6	A	129	140	Right-handed alpha
Helix 7	7	A	156	160	Right-handed 310
Helix 8	8	A	179	193	Right-handed alpha
Helix 9	9	A	201	213	Right-handed alpha
Helix 10	10	A	213	231	Right-handed alpha
Helix 11	11	A	236	240	Right-handed 310
Helix 12	12	A	250	254	Right-handed 310
Helix 13	13	A	255	266	Right-handed alpha
Helix 14	14	A	266	291	Right-handed alpha
Helix 15	15	A	293	309	Right-handed alpha
Helix 16	16	B	39	52	Right-handed alpha
Helix 17	17	B	64	74	Right-handed alpha
Helix 18	18	B	83	91	Right-handed 310
Helix 19	19	B	100	102	Right-handed 310
Helix 20	20	B	103	115	Right-handed alpha
Helix 21	21	B	128	140	Right-handed alpha
Helix 22	22	B	156	160	Right-handed 310
Helix 23	23	B	179	193	Right-handed alpha
Helix 24	24	B	201	213	Right-handed alpha
Helix 25	25	B	213	230	Right-handed alpha
Helix 26	26	B	236	240	Right-handed 310
Helix 27	27	B	244	249	Right-handed alpha
Helix 28	28	B	250	254	Right-handed 310
Helix 29	29	B	255	266	Right-handed alpha
Helix 30	30	B	266	290	Right-handed alpha
Helix 31	31	B	292	302	Right-handed alpha
Helix 32	32	B	303	309	Right-handed 310
Helix 33	33	C	39	52	Right-handed alpha
Helix 34	34	C	64	74	Right-handed alpha
Helix 35	35	C	83	91	Right-handed 310
Helix 36	36	C	100	102	Right-handed 310
Helix 37	37	C	103	115	Right-handed alpha
Helix 38	38	C	129	140	Right-handed alpha
Helix 39	39	C	156	160	Right-handed 310
Helix 40	40	C	179	193	Right-handed alpha
Helix 41	41	C	201	213	Right-handed alpha
Helix 42	42	C	213	231	Right-handed alpha
Helix 43	43	C	236	240	Right-handed 310
Helix 44	44	C	244	249	Right-handed alpha
Helix 45	45	C	250	254	Right-handed 310
Helix 46	46	C	255	266	Right-handed alpha
Helix 47	47	C	266	290	Right-handed alpha
Helix 48	48	C	292	301	Right-handed alpha
Helix 49	49	C	302	304	Right-handed 310
Helix 50	50	D	39	53	Right-handed alpha
Helix 51	51	D	64	74	Right-handed alpha
Helix 52	52	D	85	91	Right-handed 310
Helix 53	53	D	100	102	Right-handed 310
Helix 54	54	D	103	115	Right-handed alpha
Helix 55	55	D	128	140	Right-handed alpha
Helix 56	56	D	156	160	Right-handed 310
Helix 57	57	D	179	193	Right-handed alpha
Helix 58	58	D	201	213	Right-handed alpha
Helix 59	59	D	213	231	Right-handed alpha
Helix 60	60	D	236	240	Right-handed 310
Helix 61	61	D	245	254	Right-handed 310
Helix 62	62	D	255	266	Right-handed alpha
Helix 63	63	D	266	290	Right-handed alpha
Helix 64	64	D	292	308	Right-handed alpha

There are 8 sheets in PDB entry 3GGO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	57	61	parallel
Strand 3	A	32	36	parallel
Strand 4	A	94	97	parallel
Strand 5	A	120	123	parallel
Strand 6	A	143	144	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	196	199	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	57	61	parallel
Strand 3	B	32	36	parallel
Strand 4	B	94	97	parallel
Strand 5	B	120	123	parallel
Strand 6	B	143	144	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	196	199	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	57	61	parallel
Strand 3	C	32	36	parallel
Strand 4	C	94	97	parallel
Strand 5	C	120	123	parallel
Strand 6	C	143	144	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	196	199	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	57	61	parallel
Strand 3	D	32	36	parallel
Strand 4	D	94	97	parallel
Strand 5	D	120	123	parallel
Strand 6	D	143	144	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	169	172	anti-parallel
Strand 3	D	196	199	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGO