Analysis of interatomic Contacts of Structural Units in PDB entry:
3GGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GGS entry

There are 3 chains in PDB entry 3GGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ASP 286
B
 MET 1PRO 285
C
 ASN 3PRO 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3GGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 19Right-handed alpha
Helix 2
2
A
35 42Right-handed 310
Helix 3
3
A
51 53Right-handed 310
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
97 107Right-handed alpha
Helix 7
7
A
138 142Right-handed alpha
Helix 8
8
A
167 182Right-handed alpha
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
221 232Right-handed alpha
Helix 11
11
A
248 254Right-handed alpha
Helix 12
12
A
264 279Right-handed alpha
Helix 13
13
B
6 19Right-handed alpha
Helix 14
14
B
35 42Right-handed 310
Helix 15
15
B
51 53Right-handed 310
Helix 16
16
B
86 90Right-handed 310
Helix 17
17
B
92 97Right-handed alpha
Helix 18
18
B
97 107Right-handed alpha
Helix 19
19
B
139 143Right-handed 310
Helix 20
20
B
167 182Right-handed alpha
Helix 21
21
B
202 212Right-handed alpha
Helix 22
22
B
221 231Right-handed alpha
Helix 23
23
B
249 254Right-handed alpha
Helix 24
24
B
264 278Right-handed alpha
Helix 25
25
B
279 282Right-handed 310
Helix 26
26
C
6 19Right-handed alpha
Helix 27
27
C
36 42Right-handed 310
Helix 28
28
C
51 53Right-handed 310
Helix 29
29
C
86 90Right-handed 310
Helix 30
30
C
92 97Right-handed alpha
Helix 31
31
C
97 107Right-handed alpha
Helix 32
32
C
138 143Right-handed alpha
Helix 33
33
C
167 182Right-handed alpha
Helix 34
34
C
202 212Right-handed alpha
Helix 35
35
C
221 232Right-handed alpha
Helix 36
36
C
249 254Right-handed alpha
Helix 37
37
C
262 279Right-handed alpha
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There are 3 sheets in PDB entry 3GGS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
67 73anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
27 31parallel
Strand 5
A
110 119parallel
Strand 6
A
234 244parallel
Strand 7
A
129 137anti-parallel
Strand 8
A
188 194parallel
Strand 9
A
216 218parallel
Strand 10
A
110 119anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 49first strand
Strand 2
B
67 73anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
27 31parallel
Strand 5
B
110 119parallel
Strand 6
B
234 244parallel
Strand 7
B
129 137anti-parallel
Strand 8
B
188 194parallel
Strand 9
B
216 218parallel
Strand 10
B
110 119anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 49first strand
Strand 2
C
67 73anti-parallel
Strand 3
C
76 82anti-parallel
Strand 4
C
27 31parallel
Strand 5
C
110 119parallel
Strand 6
C
234 244parallel
Strand 7
C
129 137anti-parallel
Strand 8
C
188 194parallel
Strand 9
C
216 218parallel
Strand 10
C
110 119anti-parallel
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