Analysis of interatomic Contacts of Structural Units in PDB entry:
3GHG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GHG entry

There are 20 chains in PDB entry 3GHG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 27GLN 200
B
LYS 58PHE 458
C
ARG 14ILE 394
D
ALA 27GLN 200
E
LYS 58PHE 458
F
ARG 14GLY 395
G
ALA 27GLN 200
H
LYS 58PHE 458
I
VAL 2GLY 395
J
ALA 27ASP 212
K
LYS 58PHE 458
L
ARG 5GLY 395
M
GLY 1PRO 4
N
GLY 1PRO 4
O
GLY 1PRO 4
P
GLY 1PRO 4
Q
GLY 1PRO 4
R
GLY 1PRO 4
S
GLY 1PRO 4
T
GLY 1PRO 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are118 helices in PDB entry 3GHG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
47 74Right-handed alpha
Helix 2
2
A
74 93Right-handed alpha
Helix 3
3
A
96 111Right-handed alpha
Helix 4
4
A
112 161Right-handed alpha
Helix 5
5
A
162 164Right-handed 310
Helix 6
6
A
174 190Right-handed alpha
Helix 7
7
B
78 116Right-handed alpha
Helix 8
8
B
116 138Right-handed alpha
Helix 9
9
B
141 151Right-handed alpha
Helix 10
10
B
151 159Right-handed alpha
Helix 11
11
B
159 193Right-handed alpha
Helix 12
12
B
210 217Right-handed alpha
Helix 13
13
B
265 271Right-handed alpha
Helix 14
14
B
295 305Right-handed alpha
Helix 15
15
B
333 337Right-handed 310
Helix 16
16
B
361 366Right-handed alpha
Helix 17
17
B
393 398Right-handed alpha
Helix 18
18
B
423 427Right-handed 310
Helix 19
19
B
437 442Right-handed alpha
Helix 20
20
C
22 69Right-handed alpha
Helix 21
21
C
78 133Right-handed alpha
Helix 22
22
C
152 159Right-handed alpha
Helix 23
23
C
207 214Right-handed alpha
Helix 24
24
C
229 238Right-handed alpha
Helix 25
25
C
269 273Right-handed 310
Helix 26
26
C
288 292Right-handed 310
Helix 27
27
C
300 305Right-handed alpha
Helix 28
28
C
325 331Right-handed alpha
Helix 29
29
C
390 392Right-handed 310
Helix 30
30
D
47 78Right-handed alpha
Helix 31
31
D
79 93Right-handed alpha
Helix 32
32
D
98 104Right-handed alpha
Helix 33
33
D
104 110Right-handed alpha
Helix 34
34
D
116 160Right-handed alpha
Helix 35
35
D
174 190Right-handed alpha
Helix 36
36
E
78 87Right-handed alpha
Helix 37
37
E
89 96Right-handed alpha
Helix 38
38
E
97 103Right-handed alpha
Helix 39
39
E
105 115Right-handed alpha
Helix 40
40
E
117 139Right-handed alpha
Helix 41
41
E
142 187Right-handed alpha
Helix 42
42
E
187 192Right-handed alpha
Helix 43
43
E
210 217Right-handed alpha
Helix 44
44
E
243 247Right-handed 310
Helix 45
45
E
265 271Right-handed alpha
Helix 46
46
E
295 304Right-handed alpha
Helix 47
47
E
333 337Right-handed 310
Helix 48
48
E
361 367Right-handed alpha
Helix 49
49
E
393 399Right-handed alpha
Helix 50
50
F
21 31Right-handed alpha
Helix 51
51
F
36 67Right-handed alpha
Helix 52
52
F
85 98Right-handed alpha
Helix 53
53
F
99 104Right-handed alpha
Helix 54
54
F
104 134Right-handed alpha
Helix 55
55
F
152 160Right-handed alpha
Helix 56
56
F
207 214Right-handed alpha
Helix 57
57
F
229 238Right-handed alpha
Helix 58
58
F
269 273Right-handed 310
Helix 59
59
F
300 305Right-handed alpha
Helix 60
60
F
325 331Right-handed alpha
Helix 61
61
F
389 395Right-handed alpha
Helix 62
62
G
47 160Right-handed alpha
Helix 63
63
G
174 189Right-handed alpha
Helix 64
64
H
78 88Right-handed alpha
Helix 65
65
H
89 103Right-handed alpha
Helix 66
66
H
108 115Right-handed alpha
Helix 67
67
H
117 122Right-handed alpha
Helix 68
68
H
123 151Right-handed alpha
Helix 69
69
H
154 159Right-handed alpha
Helix 70
70
H
160 192Right-handed alpha
Helix 71
71
H
210 218Right-handed alpha
Helix 72
72
H
243 247Right-handed 310
Helix 73
73
H
265 272Right-handed alpha
Helix 74
74
H
295 306Right-handed alpha
Helix 75
75
H
361 367Right-handed alpha
Helix 76
76
H
393 398Right-handed alpha
Helix 77
77
H
438 442Right-handed alpha
Helix 78
78
I
4 8Right-handed 310
Helix 79
79
I
21 38Right-handed alpha
Helix 80
80
I
39 66Right-handed alpha
Helix 81
81
I
77 121Right-handed alpha
Helix 82
82
I
122 133Right-handed alpha
Helix 83
83
I
152 160Right-handed alpha
Helix 84
84
I
207 214Right-handed alpha
Helix 85
85
I
229 238Right-handed alpha
Helix 86
86
I
269 273Right-handed 310
Helix 87
87
I
288 292Right-handed 310
Helix 88
88
I
298 305Right-handed 310
Helix 89
89
I
325 330Right-handed alpha
Helix 90
90
I
389 395Right-handed alpha
Helix 91
91
J
47 160Right-handed alpha
Helix 92
92
J
174 190Right-handed alpha
Helix 93
93
K
78 89Right-handed alpha
Helix 94
94
K
90 93Right-handed 310
Helix 95
95
K
94 105Right-handed alpha
Helix 96
96
K
108 115Right-handed alpha
Helix 97
97
K
116 160Right-handed alpha
Helix 98
98
K
160 193Right-handed alpha
Helix 99
99
K
210 217Right-handed alpha
Helix 100
100
K
243 247Right-handed 310
Helix 101
101
K
265 271Right-handed alpha
Helix 102
102
K
296 304Right-handed alpha
Helix 103
103
K
333 337Right-handed 310
Helix 104
104
K
361 366Right-handed alpha
Helix 105
105
K
393 399Right-handed alpha
Helix 106
106
K
437 442Right-handed alpha
Helix 107
107
L
21 69Right-handed alpha
Helix 108
108
L
78 91Right-handed alpha
Helix 109
109
L
93 103Right-handed alpha
Helix 110
110
L
106 135Right-handed alpha
Helix 111
111
L
152 160Right-handed alpha
Helix 112
112
L
207 214Right-handed alpha
Helix 113
113
L
229 239Right-handed alpha
Helix 114
114
L
269 273Right-handed 310
Helix 115
115
L
288 292Right-handed 310
Helix 116
116
L
300 305Right-handed alpha
Helix 117
117
L
325 331Right-handed alpha
Helix 118
118
L
389 395Right-handed alpha
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There are 34 sheets in PDB entry 3GHG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 46first strand
Strand 2
E
75 77anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
76 77first strand
Strand 2
D
44 45anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
198 199first strand
Strand 2
C
140 141parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
203 204first strand
Strand 2
C
215 218anti-parallel
Strand 3
C
226 227anti-parallel
Strand 4
C
190 197anti-parallel
Strand 5
C
381 388anti-parallel
Strand 6
C
244 251anti-parallel
Strand 7
C
259 267anti-parallel
Strand 8
C
276 277anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
165 169first strand
Strand 2
C
178 184anti-parallel
Strand 3
C
190 197anti-parallel
Strand 4
C
381 388anti-parallel
Strand 5
C
244 251anti-parallel
Strand 6
C
259 267anti-parallel
Strand 7
C
280 283anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
207 208first strand
Strand 2
B
224 227parallel
Strand 3
B
236 241anti-parallel
Strand 4
B
249 255anti-parallel
Strand 5
B
292 294anti-parallel
Strand 6
B
272 274anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
207 208first strand
Strand 2
B
224 227parallel
Strand 3
B
236 241anti-parallel
Strand 4
B
249 255anti-parallel
Strand 5
B
450 456anti-parallel
Strand 6
B
308 314anti-parallel
Strand 7
B
322 331anti-parallel
Strand 8
B
340 346anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
277 278first strand
Strand 2
B
288 289anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
18 20first strand
Strand 2
F
18 20anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
313 314first strand
Strand 2
C
333 334anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
342 343first strand
Strand 2
C
368 369anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
198 199first strand
Strand 2
F
140 141parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
223 227first strand
Strand 2
E
236 240anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
272 274first strand
Strand 2
E
292 294anti-parallel
Strand 3
E
250 255anti-parallel
Strand 4
E
449 456anti-parallel
Strand 5
E
308 315anti-parallel
Strand 6
E
321 331anti-parallel
Strand 7
E
340 347anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
410 411first strand
Strand 2
E
436 437anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
166 169first strand
Strand 2
F
178 183anti-parallel
Strand 3
F
191 197anti-parallel
Strand 4
F
381 388anti-parallel
Strand 5
F
244 251anti-parallel
Strand 6
F
257 259anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
215 216first strand
Strand 2
F
226 227anti-parallel
Strand 3
F
191 197anti-parallel
Strand 4
F
381 388anti-parallel
Strand 5
F
244 251anti-parallel
Strand 6
F
262 267anti-parallel
Strand 7
F
276 277anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
44 45first strand
Strand 2
K
74 77anti-parallel
Strand 3
K
65 66anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
76 77first strand
Strand 2
J
44 45anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
198 199first strand
Strand 2
I
140 141parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
223 227first strand
Strand 2
H
236 241anti-parallel
Strand 3
H
249 255anti-parallel
Strand 4
H
292 293anti-parallel
Strand 5
H
273 274anti-parallel
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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
223 227first strand
Strand 2
H
236 241anti-parallel
Strand 3
H
249 255anti-parallel
Strand 4
H
449 456anti-parallel
Strand 5
H
308 315anti-parallel
Strand 6
H
321 329anti-parallel
Strand 7
H
342 347anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
410 411first strand
Strand 2
H
436 437anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
18 20first strand
Strand 2
L
18 20anti-parallel
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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
149 150first strand
Strand 2
I
165 169parallel
Strand 3
I
178 183anti-parallel
Strand 4
I
191 197anti-parallel
Strand 5
I
226 227anti-parallel
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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
149 150first strand
Strand 2
I
165 169parallel
Strand 3
I
178 183anti-parallel
Strand 4
I
191 197anti-parallel
Strand 5
I
381 388anti-parallel
Strand 6
I
244 251anti-parallel
Strand 7
I
259 267anti-parallel
Strand 8
I
276 277anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
198 199first strand
Strand 2
L
140 141parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
203 204first strand
Strand 2
L
215 218anti-parallel
Strand 3
L
226 227anti-parallel
Strand 4
L
190 197anti-parallel
Strand 5
L
381 386anti-parallel
Strand 6
L
244 251anti-parallel
Strand 7
L
257 267anti-parallel
Strand 8
L
276 277anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
146 150first strand
Strand 2
L
165 169parallel
Strand 3
L
178 184anti-parallel
Strand 4
L
190 197anti-parallel
Strand 5
L
381 386anti-parallel
Strand 6
L
244 251anti-parallel
Strand 7
L
257 267anti-parallel
Strand 8
L
280 283anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
207 208first strand
Strand 2
K
223 227parallel
Strand 3
K
236 241anti-parallel
Strand 4
K
249 255anti-parallel
Strand 5
K
292 294anti-parallel
Strand 6
K
272 274anti-parallel
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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
207 208first strand
Strand 2
K
223 227parallel
Strand 3
K
236 241anti-parallel
Strand 4
K
249 255anti-parallel
Strand 5
K
449 456anti-parallel
Strand 6
K
308 315anti-parallel
Strand 7
K
321 331anti-parallel
Strand 8
K
340 346anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
374 376first strand
Strand 2
K
402 404anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
311 313first strand
Strand 2
L
334 336anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
342 343first strand
Strand 2
L
368 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il