Analysis of interatomic Contacts of Structural Units in PDB entry:
3GOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GOY entry

There are 4 chains in PDB entry 3GOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1532LYS 1720
B
 LYS 1532LYS 1720
C
 LYS 1532LYS 1720
D
 LYS 1532LYS 1720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3GOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1545 1551Right-handed alpha
Helix 2
2
A
1552 1560Right-handed alpha
Helix 3
3
A
1572 1590Right-handed alpha
Helix 4
4
A
1606 1615Right-handed alpha
Helix 5
5
A
1637 1643Right-handed alpha
Helix 6
6
B
1545 1560Right-handed alpha
Helix 7
7
B
1572 1590Right-handed alpha
Helix 8
8
B
1606 1615Right-handed alpha
Helix 9
9
B
1637 1643Right-handed alpha
Helix 10
10
C
1545 1560Right-handed alpha
Helix 11
11
C
1572 1590Right-handed alpha
Helix 12
12
C
1606 1615Right-handed alpha
Helix 13
13
C
1637 1643Right-handed alpha
Helix 14
14
D
1545 1560Right-handed alpha
Helix 15
15
D
1572 1590Right-handed alpha
Helix 16
16
D
1606 1615Right-handed alpha
Helix 17
17
D
1637 1643Right-handed alpha
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There are 8 sheets in PDB entry 3GOY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1537 1540first strand
Strand 2
A
1564 1571anti-parallel
Strand 3
A
1710 1718anti-parallel
Strand 4
A
1655 1663anti-parallel
Strand 5
A
1596 1603anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1632 1635first strand
Strand 2
A
1701 1704anti-parallel
Strand 3
A
1691 1693anti-parallel
Strand 4
A
1667 1669parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1537 1540first strand
Strand 2
B
1564 1571anti-parallel
Strand 3
B
1710 1718anti-parallel
Strand 4
B
1655 1663anti-parallel
Strand 5
B
1596 1603anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1632 1635first strand
Strand 2
B
1701 1704anti-parallel
Strand 3
B
1691 1693anti-parallel
Strand 4
B
1667 1669parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1537 1540first strand
Strand 2
C
1564 1571anti-parallel
Strand 3
C
1710 1718anti-parallel
Strand 4
C
1655 1663anti-parallel
Strand 5
C
1596 1603anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1632 1635first strand
Strand 2
C
1701 1704anti-parallel
Strand 3
C
1691 1693anti-parallel
Strand 4
C
1667 1669parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1537 1540first strand
Strand 2
D
1564 1571anti-parallel
Strand 3
D
1710 1718anti-parallel
Strand 4
D
1655 1663anti-parallel
Strand 5
D
1596 1603anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1632 1635first strand
Strand 2
D
1701 1704anti-parallel
Strand 3
D
1691 1693anti-parallel
Strand 4
D
1667 1669parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il