Analysis of interatomic Contacts of Structural Units in PDB entry:
3GTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GTJ entry

There is 1 chain in PDB entry 3GTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ARG 1289

There are115 helices in PDB entry 3GTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	95	104	Right-handed alpha
Helix 3	3	A	130	139	Right-handed alpha
Helix 4	4	A	140	142	Right-handed 310
Helix 5	5	A	204	213	Right-handed alpha
Helix 6	6	A	216	222	Right-handed alpha
Helix 7	7	A	243	247	Right-handed 310
Helix 8	8	A	260	282	Right-handed alpha
Helix 9	9	A	296	305	Right-handed alpha
Helix 10	10	A	325	330	Right-handed alpha
Helix 11	11	A	368	374	Right-handed alpha
Helix 12	12	A	384	395	Right-handed alpha
Helix 13	13	A	471	475	Right-handed 310
Helix 14	14	A	494	503	Right-handed alpha
Helix 15	15	A	507	510	Right-handed 310
Helix 16	16	A	525	534	Right-handed alpha
Helix 17	17	A	543	553	Right-handed alpha
Helix 18	18	A	574	579	Right-handed alpha
Helix 19	19	A	618	623	Right-handed alpha
Helix 20	20	A	628	638	Right-handed alpha
Helix 21	21	A	638	659	Right-handed alpha
Helix 22	22	A	665	669	Right-handed 310
Helix 23	23	A	672	685	Right-handed alpha
Helix 24	24	A	687	698	Right-handed alpha
Helix 25	25	A	709	734	Right-handed alpha
Helix 26	26	A	741	748	Right-handed alpha
Helix 27	27	A	754	763	Right-handed alpha
Helix 28	28	A	809	830	Right-handed alpha
Helix 29	29	A	830	835	Right-handed alpha
Helix 30	30	A	835	846	Right-handed alpha
Helix 31	31	A	867	871	Right-handed 310
Helix 32	32	A	893	898	Right-handed alpha
Helix 33	33	A	909	913	Right-handed 310
Helix 34	34	A	924	947	Right-handed alpha
Helix 35	35	A	959	966	Right-handed alpha
Helix 36	36	A	982	995	Right-handed alpha
Helix 37	37	A	1004	1014	Right-handed alpha
Helix 38	38	A	1015	1026	Right-handed alpha
Helix 39	39	A	1039	1056	Right-handed alpha
Helix 40	40	A	1063	1078	Right-handed alpha
Helix 41	41	A	1097	1107	Right-handed alpha
Helix 42	42	A	1127	1139	Right-handed alpha
Helix 43	43	A	1208	1221	Right-handed alpha
Helix 44	44	A	1257	1267	Right-handed alpha
Helix 45	45	A	1312	1316	Right-handed 310
Helix 46	46	A	1331	1339	Right-handed alpha
Helix 47	47	A	1341	1358	Right-handed alpha
Helix 48	48	A	1364	1378	Right-handed alpha
Helix 49	49	A	1395	1401	Right-handed alpha
Helix 50	50	A	1404	1415	Right-handed alpha
Helix 51	51	A	1423	1429	Right-handed alpha
Helix 52	52	A	1436	1440	Right-handed 310
Helix 53	53	B	28	42	Right-handed alpha
Helix 54	54	B	44	57	Right-handed alpha
Helix 55	55	B	57	64	Right-handed alpha
Helix 56	56	B	113	118	Right-handed alpha
Helix 57	57	B	179	183	Right-handed 310
Helix 58	58	B	185	192	Right-handed alpha
Helix 59	59	B	282	290	Right-handed alpha
Helix 60	60	B	296	302	Right-handed alpha
Helix 61	61	B	307	313	Right-handed alpha
Helix 62	62	B	314	319	Right-handed alpha
Helix 63	63	B	327	331	Right-handed 310
Helix 64	64	B	341	345	Right-handed 310
Helix 65	65	B	348	356	Right-handed alpha
Helix 66	66	B	371	390	Right-handed alpha
Helix 67	67	B	400	402	Right-handed 310
Helix 68	68	B	408	433	Right-handed alpha
Helix 69	69	B	450	464	Right-handed alpha
Helix 70	70	B	487	495	Right-handed alpha
Helix 71	71	B	515	519	Right-handed 310
Helix 72	72	B	551	559	Right-handed alpha
Helix 73	73	B	565	569	Right-handed 310
Helix 74	74	B	592	605	Right-handed alpha
Helix 75	75	B	654	666	Right-handed alpha
Helix 76	76	B	681	688	Right-handed alpha
Helix 77	77	B	696	700	Right-handed 310
Helix 78	78	B	744	749	Right-handed 310
Helix 79	79	B	752	756	Right-handed 310
Helix 80	80	B	758	762	Right-handed 310
Helix 81	81	B	763	775	Right-handed alpha
Helix 82	82	B	808	812	Right-handed 310
Helix 83	83	B	843	848	Right-handed alpha
Helix 84	84	B	995	999	Right-handed 310
Helix 85	85	B	1022	1039	Right-handed alpha
Helix 86	86	B	1051	1061	Right-handed alpha
Helix 87	87	B	1098	1102	Right-handed 310
Helix 88	88	B	1131	1142	Right-handed alpha
Helix 89	89	B	1144	1150	Right-handed alpha
Helix 90	90	B	1198	1210	Right-handed alpha
Helix 91	91	C	26	41	Right-handed alpha
Helix 92	92	C	59	70	Right-handed alpha
Helix 93	93	C	75	80	Right-handed 310
Helix 94	94	C	114	116	Right-handed 310
Helix 95	95	C	165	171	Right-handed 310
Helix 96	96	C	196	201	Right-handed alpha
Helix 97	97	C	204	210	Right-handed 310
Helix 98	98	C	239	270	Right-handed alpha
Helix 99	99	E	3	27	Right-handed alpha
Helix 100	100	E	31	36	Right-handed alpha
Helix 101	101	E	89	104	Right-handed alpha
Helix 102	102	E	117	122	Right-handed alpha
Helix 103	103	E	138	140	Right-handed 310
Helix 104	104	E	157	168	Right-handed alpha
Helix 105	105	E	171	175	Right-handed 310
Helix 106	106	E	182	189	Right-handed alpha
Helix 107	107	F	86	102	Right-handed alpha
Helix 108	108	F	116	127	Right-handed alpha
Helix 109	109	J	17	27	Right-handed alpha
Helix 110	110	J	31	38	Right-handed alpha
Helix 111	111	J	43	52	Right-handed alpha
Helix 112	112	J	56	61	Right-handed alpha
Helix 113	113	K	5	10	Right-handed 310
Helix 114	114	K	42	49	Right-handed alpha
Helix 115	115	K	82	110	Right-handed alpha

There are 43 sheets in PDB entry 3GTJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	19	anti-parallel
Strand 3	B	1214	1217	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	90	first strand
Strand 2	A	236	241	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	180	183	anti-parallel
Strand 3	A	200	202	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	B	1128	1129	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	348	355	parallel
Strand 3	A	486	490	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	348	355	parallel
Strand 3	B	1104	1106	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	367	first strand
Strand 2	A	455	463	parallel
Strand 3	A	442	445	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	406	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	614	615	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	881	first strand
Strand 2	A	954	956	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1119	first strand
Strand 2	A	1303	1308	anti-parallel
Strand 3	A	1282	1287	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1141	1142	first strand
Strand 2	A	1272	1274	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1228	first strand
Strand 2	A	1237	1242	anti-parallel
Strand 3	A	1192	1197	anti-parallel
Strand 4	A	1147	1153	anti-parallel
Strand 5	I	42	45	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1442	1444	first strand
Strand 2	F	133	137	anti-parallel
Strand 3	F	143	147	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	125	130	anti-parallel
Strand 3	B	166	171	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	218	first strand
Strand 2	B	404	407	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	269	272	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	537	538	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	635	anti-parallel
Strand 3	B	693	694	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	590	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	623	627	parallel
Strand 4	B	614	618	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	638	641	anti-parallel
Strand 3	B	740	741	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	796	first strand
Strand 2	B	853	856	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	994	first strand
Strand 2	B	838	842	parallel
Strand 3	B	1010	1012	anti-parallel
Strand 4	B	820	827	parallel
Strand 5	B	1085	1093	anti-parallel
Strand 6	B	1069	1070	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	861	first strand
Strand 2	B	963	969	anti-parallel
Strand 3	B	947	955	anti-parallel
Strand 4	B	904	905	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	917	first strand
Strand 2	B	934	936	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1001	1002	first strand
Strand 2	B	1072	1073	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1157	1163	first strand
Strand 2	B	1191	1197	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	13	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	228	233	anti-parallel
Strand 4	C	176	177	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	97	102	anti-parallel
Strand 3	C	153	163	anti-parallel
Strand 4	C	42	54	anti-parallel
Strand 5	L	65	67	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	145	147	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	115	116	parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	207	214	parallel
Strand 3	E	196	201	anti-parallel

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There are 9 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	98	first strand
Strand 2	H	141	145	anti-parallel
Strand 3	H	54	58	anti-parallel
Strand 4	H	7	16	anti-parallel
Strand 5	H	24	30	anti-parallel
Strand 6	H	37	42	anti-parallel
Strand 7	H	121	127	anti-parallel
Strand 8	H	112	118	anti-parallel
Strand 9	H	100	105	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	18	first strand
Strand 2	I	25	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	84	first strand
Strand 2	I	100	103	anti-parallel
Strand 3	I	108	111	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	20	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	63	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	37	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GTJ