Analysis of interatomic Contacts of Structural Units in PDB entry:
3GTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GTM entry

There is 1 chain in PDB entry 3GTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2GLU 1297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 3GTM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 31Right-handed alpha
Helix 2
2
A
95 105Right-handed alpha
Helix 3
3
A
119 128Right-handed alpha
Helix 4
4
A
130 143Right-handed alpha
Helix 5
5
A
203 212Right-handed alpha
Helix 6
6
A
216 221Right-handed alpha
Helix 7
7
A
230 233Right-handed 310
Helix 8
8
A
243 247Right-handed 310
Helix 9
9
A
260 281Right-handed alpha
Helix 10
10
A
288 303Right-handed alpha
Helix 11
11
A
324 329Right-handed 310
Helix 12
12
A
367 374Right-handed alpha
Helix 13
13
A
384 395Right-handed alpha
Helix 14
14
A
471 473Right-handed 310
Helix 15
15
A
474 479Right-handed alpha
Helix 16
16
A
494 503Right-handed alpha
Helix 17
17
A
507 510Right-handed 310
Helix 18
18
A
525 536Right-handed alpha
Helix 19
19
A
543 553Right-handed alpha
Helix 20
20
A
574 579Right-handed alpha
Helix 21
21
A
618 623Right-handed alpha
Helix 22
22
A
628 638Right-handed alpha
Helix 23
23
A
638 661Right-handed alpha
Helix 24
24
A
665 670Right-handed 310
Helix 25
25
A
672 683Right-handed alpha
Helix 26
26
A
683 696Right-handed alpha
Helix 27
27
A
709 737Right-handed alpha
Helix 28
28
A
741 750Right-handed alpha
Helix 29
29
A
754 763Right-handed alpha
Helix 30
30
A
809 826Right-handed alpha
Helix 31
31
A
828 846Right-handed alpha
Helix 32
32
A
867 871Right-handed 310
Helix 33
33
A
889 898Right-handed alpha
Helix 34
34
A
922 947Right-handed alpha
Helix 35
35
A
959 971Right-handed alpha
Helix 36
36
A
982 992Right-handed alpha
Helix 37
37
A
1004 1026Right-handed alpha
Helix 38
38
A
1027 1032Right-handed alpha
Helix 39
39
A
1038 1055Right-handed alpha
Helix 40
40
A
1063 1074Right-handed alpha
Helix 41
41
A
1096 1105Right-handed alpha
Helix 42
42
A
1122 1126Right-handed 310
Helix 43
43
A
1127 1136Right-handed alpha
Helix 44
44
A
1143 1146Right-handed alpha
Helix 45
45
A
1166 1171Right-handed alpha
Helix 46
46
A
1171 1176Right-handed alpha
Helix 47
47
A
1200 1204Right-handed 310
Helix 48
48
A
1208 1217Right-handed alpha
Helix 49
49
A
1258 1270Right-handed alpha
Helix 50
50
A
1312 1317Right-handed alpha
Helix 51
51
A
1333 1338Right-handed alpha
Helix 52
52
A
1340 1359Right-handed alpha
Helix 53
53
A
1364 1375Right-handed alpha
Helix 54
54
A
1388 1392Right-handed 310
Helix 55
55
A
1395 1400Right-handed alpha
Helix 56
56
A
1405 1415Right-handed alpha
Helix 57
57
A
1423 1430Right-handed alpha
Helix 58
58
A
1436 1439Right-handed 310
Helix 59
59
A
1447 1450Right-handed 310
Helix 60
60
B
28 42Right-handed alpha
Helix 61
61
B
44 56Right-handed alpha
Helix 62
62
B
57 63Right-handed alpha
Helix 63
63
B
113 120Right-handed alpha
Helix 64
64
B
179 184Right-handed 310
Helix 65
65
B
185 192Right-handed alpha
Helix 66
66
B
282 290Right-handed alpha
Helix 67
67
B
297 301Right-handed 310
Helix 68
68
B
307 320Right-handed alpha
Helix 69
69
B
326 334Right-handed alpha
Helix 70
70
B
348 359Right-handed alpha
Helix 71
71
B
370 390Right-handed alpha
Helix 72
72
B
400 402Right-handed 310
Helix 73
73
B
408 426Right-handed alpha
Helix 74
74
B
427 434Right-handed alpha
Helix 75
75
B
450 464Right-handed alpha
Helix 76
76
B
487 496Right-handed alpha
Helix 77
77
B
509 513Right-handed 310
Helix 78
78
B
515 519Right-handed 310
Helix 79
79
B
551 561Right-handed alpha
Helix 80
80
B
567 569Right-handed 310
Helix 81
81
B
592 606Right-handed alpha
Helix 82
82
B
619 621Right-handed 310
Helix 83
83
B
654 665Right-handed alpha
Helix 84
84
B
680 687Right-handed alpha
Helix 85
85
B
695 699Right-handed alpha
Helix 86
86
B
744 749Right-handed 310
Helix 87
87
B
751 756Right-handed 310
Helix 88
88
B
758 762Right-handed 310
Helix 89
89
B
763 771Right-handed alpha
Helix 90
90
B
782 787Right-handed 310
Helix 91
91
B
806 811Right-handed 310
Helix 92
92
B
842 849Right-handed alpha
Helix 93
93
B
889 893Right-handed 310
Helix 94
94
B
1013 1017Right-handed 310
Helix 95
95
B
1022 1039Right-handed alpha
Helix 96
96
B
1052 1062Right-handed alpha
Helix 97
97
B
1131 1142Right-handed alpha
Helix 98
98
B
1143 1150Right-handed alpha
Helix 99
99
B
1197 1209Right-handed alpha
Helix 100
100
C
26 40Right-handed alpha
Helix 101
101
C
59 70Right-handed alpha
Helix 102
102
C
76 80Right-handed 310
Helix 103
103
C
196 201Right-handed alpha
Helix 104
104
C
204 208Right-handed 310
Helix 105
105
C
239 244Right-handed 310
Helix 106
106
C
245 264Right-handed alpha
Helix 107
107
E
2 5Right-handed 310
Helix 108
108
E
6 27Right-handed alpha
Helix 109
109
E
31 37Right-handed alpha
Helix 110
110
E
38 47Right-handed alpha
Helix 111
111
E
54 58Right-handed 310
Helix 112
112
E
89 104Right-handed alpha
Helix 113
113
E
119 123Right-handed 310
Helix 114
114
E
143 147Right-handed 310
Helix 115
115
E
157 169Right-handed alpha
Helix 116
116
E
182 188Right-handed alpha
Helix 117
117
F
86 103Right-handed alpha
Helix 118
118
F
116 127Right-handed alpha
Helix 119
119
H
83 87Right-handed 310
Helix 120
120
I
60 65Right-handed 310
Helix 121
121
J
17 27Right-handed alpha
Helix 122
122
J
31 38Right-handed alpha
Helix 123
123
J
43 52Right-handed alpha
Helix 124
124
J
56 61Right-handed alpha
Helix 125
125
K
39 48Right-handed alpha
Helix 126
126
K
82 112Right-handed alpha
Helix 127
128
S
170 187Right-handed alpha
Helix 128
129
S
193 203Right-handed alpha
Helix 129
130
S
225 230Right-handed 310
Helix 130
131
S
240 257Right-handed alpha
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There are 49 sheets in PDB entry 3GTM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1418 1419first strand
Strand 2
A
17 21anti-parallel
Strand 3
B
1212 1214anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 91first strand
Strand 2
A
235 241anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 107first strand
Strand 2
A
112 113anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 153first strand
Strand 2
A
161 163anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
198 202anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
363 364first strand
Strand 2
A
455 460parallel
Strand 3
A
441 445anti-parallel
Strand 4
A
486 490anti-parallel
Strand 5
A
348 355anti-parallel
Strand 6
A
468 470parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
363 364first strand
Strand 2
A
455 460parallel
Strand 3
A
441 445anti-parallel
Strand 4
A
486 490anti-parallel
Strand 5
A
348 355anti-parallel
Strand 6
B
1104 1106anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 379first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
411 413anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
540 542first strand
Strand 2
A
571 573anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
587 589first strand
Strand 2
A
606 608anti-parallel
Strand 3
A
612 614anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
766 767first strand
Strand 2
A
799 800anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
769 770first strand
Strand 2
A
773 774anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
849 850first strand
Strand 2
A
856 857anti-parallel
Strand 3
A
863 865anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
879 882first strand
Strand 2
A
953 956anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1280 1287first strand
Strand 2
A
1303 1309anti-parallel
Strand 3
A
1116 1119anti-parallel
Strand 4
A
1328 1329anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1141 1142first strand
Strand 2
A
1272 1274anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1224 1228first strand
Strand 2
A
1236 1242anti-parallel
Strand 3
A
1191 1197anti-parallel
Strand 4
A
1147 1154anti-parallel
Strand 5
I
42 47anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1290 1292first strand
Strand 2
A
1298 1300anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1441 1445first strand
Strand 2
F
132 137anti-parallel
Strand 3
F
143 147anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 97first strand
Strand 2
B
125 132anti-parallel
Strand 3
B
165 171anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
109 111anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
203 205first strand
Strand 2
B
208 211anti-parallel
Strand 3
B
481 482anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
404 407first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
497 499parallel
Strand 4
B
537 538anti-parallel
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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
224 227first strand
Strand 2
B
234 239anti-parallel
Strand 3
B
255 259anti-parallel
Strand 4
B
270 272anti-parallel
Strand 5
B
279 281anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
241 242first strand
Strand 2
B
252 253anti-parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 639anti-parallel
Strand 3
B
690 694anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 639anti-parallel
Strand 3
B
740 741anti-parallel
Strand 4
B
703 704parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
563 565first strand
Strand 2
B
585 590anti-parallel
Strand 3
B
578 582anti-parallel
Strand 4
B
623 627parallel
Strand 5
B
614 618anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
794 796first strand
Strand 2
B
853 862anti-parallel
Strand 3
B
962 972anti-parallel
Strand 4
B
947 956anti-parallel
Strand 5
B
904 905anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
804 805first strand
Strand 2
B
1042 1043parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
821 824first strand
Strand 2
B
1089 1092anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
989 992first strand
Strand 2
B
838 841parallel
Strand 3
B
1010 1011anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
873 874first strand
Strand 2
B
914 916anti-parallel
Strand 3
B
935 936anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
910 912first strand
Strand 2
B
939 940anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1001 1002first strand
Strand 2
B
1072 1073anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1069 1070first strand
Strand 2
B
1085 1086anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1160 1163first strand
Strand 2
B
1191 1194anti-parallel
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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
7 8first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
12 13anti-parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
7 8first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
228 233anti-parallel
Strand 4
C
177 180anti-parallel
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There are 5 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 120first strand
Strand 2
C
97 103anti-parallel
Strand 3
C
153 159anti-parallel
Strand 4
C
48 54anti-parallel
Strand 5
L
65 68anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 114first strand
Strand 2
C
143 147anti-parallel
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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
61 62first strand
Strand 2
E
78 82anti-parallel
Strand 3
E
107 112parallel
Strand 4
E
131 136parallel
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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
177 178first strand
Strand 2
E
207 214parallel
Strand 3
E
195 201anti-parallel
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There are 9 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
7 16first strand
Strand 2
H
23 30anti-parallel
Strand 3
H
37 43anti-parallel
Strand 4
H
121 126anti-parallel
Strand 5
H
112 118anti-parallel
Strand 6
H
95 106anti-parallel
Strand 7
H
140 145anti-parallel
Strand 8
H
54 58anti-parallel
Strand 9
H
7 16anti-parallel
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There are 3 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
15 19first strand
Strand 2
I
24 28anti-parallel
Strand 3
I
35 37anti-parallel
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There are 3 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
83 87first strand
Strand 2
I
99 103anti-parallel
Strand 3
I
109 111anti-parallel
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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
19 23first strand
Strand 2
K
30 36anti-parallel
Strand 3
K
70 77anti-parallel
Strand 4
K
56 62anti-parallel
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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
282 283first strand
Strand 2
S
295 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il