Analysis of interatomic Contacts of Structural Units in PDB entry:
3GZJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GZJ entry

There are 5 chains in PDB entry 3GZJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 10	ASP 263
B	GLN 10	ASP 263
C	GLN 10	ASP 263
D	GLN 10	ASP 263
E	GLN 10	ASP 263

There are 69 helices in PDB entry 3GZJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	27	Right-handed 310
Helix 2	2	A	28	36	Right-handed alpha
Helix 3	3	A	54	58	Right-handed 310
Helix 4	4	A	60	74	Right-handed alpha
Helix 5	5	A	88	100	Right-handed alpha
Helix 6	6	A	122	132	Right-handed alpha
Helix 7	7	A	158	166	Right-handed alpha
Helix 8	8	A	171	182	Right-handed alpha
Helix 9	9	A	188	193	Right-handed alpha
Helix 10	10	A	202	206	Right-handed 310
Helix 11	11	A	220	232	Right-handed alpha
Helix 12	12	A	245	250	Right-handed alpha
Helix 13	13	A	250	263	Right-handed alpha
Helix 14	14	B	22	27	Right-handed 310
Helix 15	15	B	29	36	Right-handed alpha
Helix 16	16	B	54	58	Right-handed 310
Helix 17	17	B	60	74	Right-handed alpha
Helix 18	18	B	88	100	Right-handed alpha
Helix 19	19	B	122	124	Right-handed 310
Helix 20	20	B	125	132	Right-handed alpha
Helix 21	21	B	158	166	Right-handed alpha
Helix 22	22	B	171	182	Right-handed alpha
Helix 23	23	B	188	194	Right-handed alpha
Helix 24	24	B	202	206	Right-handed 310
Helix 25	25	B	220	231	Right-handed alpha
Helix 26	26	B	245	250	Right-handed alpha
Helix 27	27	B	250	263	Right-handed alpha
Helix 28	28	C	22	27	Right-handed 310
Helix 29	29	C	28	36	Right-handed alpha
Helix 30	30	C	54	58	Right-handed 310
Helix 31	31	C	60	75	Right-handed alpha
Helix 32	32	C	88	100	Right-handed alpha
Helix 33	33	C	122	124	Right-handed 310
Helix 34	34	C	125	132	Right-handed alpha
Helix 35	35	C	158	166	Right-handed alpha
Helix 36	36	C	171	180	Right-handed alpha
Helix 37	37	C	188	195	Right-handed alpha
Helix 38	38	C	202	206	Right-handed 310
Helix 39	39	C	220	231	Right-handed alpha
Helix 40	40	C	245	250	Right-handed alpha
Helix 41	41	C	250	263	Right-handed alpha
Helix 42	42	D	22	27	Right-handed 310
Helix 43	43	D	28	36	Right-handed alpha
Helix 44	44	D	54	58	Right-handed 310
Helix 45	45	D	60	74	Right-handed alpha
Helix 46	46	D	88	100	Right-handed alpha
Helix 47	47	D	122	132	Right-handed alpha
Helix 48	48	D	158	166	Right-handed alpha
Helix 49	49	D	171	182	Right-handed alpha
Helix 50	50	D	188	195	Right-handed alpha
Helix 51	51	D	202	206	Right-handed 310
Helix 52	52	D	220	232	Right-handed alpha
Helix 53	53	D	245	250	Right-handed alpha
Helix 54	54	D	250	263	Right-handed alpha
Helix 55	55	E	22	27	Right-handed 310
Helix 56	56	E	28	36	Right-handed alpha
Helix 57	57	E	60	65	Right-handed alpha
Helix 58	58	E	65	74	Right-handed alpha
Helix 59	59	E	88	100	Right-handed alpha
Helix 60	60	E	122	124	Right-handed 310
Helix 61	61	E	125	132	Right-handed alpha
Helix 62	62	E	133	138	Right-handed 310
Helix 63	63	E	158	166	Right-handed alpha
Helix 64	64	E	171	182	Right-handed alpha
Helix 65	65	E	188	194	Right-handed alpha
Helix 66	66	E	202	206	Right-handed 310
Helix 67	67	E	220	231	Right-handed alpha
Helix 68	68	E	245	250	Right-handed alpha
Helix 69	69	E	250	262	Right-handed alpha

There are 10 sheets in PDB entry 3GZJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	12	16	parallel
Strand 3	A	81	87	parallel
Strand 4	A	104	112	parallel
Strand 5	A	208	213	parallel
Strand 6	A	235	239	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	145	first strand
Strand 2	A	152	156	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	12	16	parallel
Strand 3	B	81	87	parallel
Strand 4	B	104	112	parallel
Strand 5	B	207	213	parallel
Strand 6	B	235	239	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	146	first strand
Strand 2	B	151	156	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	12	16	parallel
Strand 3	C	81	87	parallel
Strand 4	C	104	112	parallel
Strand 5	C	207	213	parallel
Strand 6	C	235	239	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	145	first strand
Strand 2	C	152	156	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	12	16	parallel
Strand 3	D	81	87	parallel
Strand 4	D	104	112	parallel
Strand 5	D	207	213	parallel
Strand 6	D	235	239	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	145	first strand
Strand 2	D	152	156	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	43	first strand
Strand 2	E	12	16	parallel
Strand 3	E	81	87	parallel
Strand 4	E	104	112	parallel
Strand 5	E	208	213	parallel
Strand 6	E	235	239	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	143	first strand
Strand 2	E	154	156	anti-parallel
Strand 3	E	185	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GZJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GZJ