Analysis of interatomic Contacts of Structural Units in PDB entry:
3H0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H0T entry

There are 3 chains in PDB entry 3H0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1SER 216
B
 GLN 1LYS 223
C
 HIS 3LYS 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3H0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
50 54Right-handed 310
Helix 3
3
A
82 86Right-handed 310
Helix 4
4
A
125 131Right-handed alpha
Helix 5
5
A
185 191Right-handed alpha
Helix 6
6
B
64 69Right-handed alpha
Helix 7
7
B
90 94Right-handed 310
Helix 8
8
B
136 138Right-handed 310
Helix 9
9
B
165 167Right-handed 310
Helix 10
10
B
196 198Right-handed 310
Helix 11
11
B
210 213Right-handed 310
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There are 14 sheets in PDB entry 3H0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
63 68anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
105 109parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
35 39anti-parallel
Strand 5
A
46 49anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
105 109parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
99 101anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
134 143anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
163 165anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
134 143anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
169 170anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
149 154anti-parallel
Strand 3
A
195 201anti-parallel
Strand 4
A
204 210anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
71 72anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
75 76anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
116 120parallel
Strand 3
B
95 103anti-parallel
Strand 4
B
35 42anti-parallel
Strand 5
B
46 55anti-parallel
Strand 6
B
59 63anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
116 120parallel
Strand 3
B
95 103anti-parallel
Strand 4
B
108 112anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
144 154anti-parallel
Strand 3
B
185 194anti-parallel
Strand 4
B
173 174anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
144 154anti-parallel
Strand 3
B
185 194anti-parallel
Strand 4
B
178 179anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
204 209anti-parallel
Strand 3
B
214 219anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 10first strand
Strand 2
C
20 23anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il