Analysis of interatomic Contacts of Structural Units in PDB entry:
3H13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H13 entry

There is 1 chain in PDB entry 3H13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 240TYR 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3H13. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
265 275Right-handed alpha
Helix 2
2
A
285 299Right-handed alpha
Helix 3
3
A
300 305Right-handed 310
Helix 4
4
A
333 340Right-handed alpha
Helix 5
5
A
345 349Right-handed 310
Helix 6
6
A
410 417Right-handed alpha
Helix 7
7
A
421 434Right-handed alpha
Helix 8
8
A
438 457Right-handed alpha
Helix 9
9
A
458 461Right-handed 310
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There are 2 sheets in PDB entry 3H13. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
276 282first strand
Strand 2
A
252 258parallel
Strand 3
A
307 317parallel
Strand 4
A
320 321anti-parallel
Strand 5
A
331 332anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
276 282first strand
Strand 2
A
252 258parallel
Strand 3
A
307 317parallel
Strand 4
A
353 361parallel
Strand 5
A
401 409parallel
Strand 6
A
463 469anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il